| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0567 |
|---|
| Symbol | |
|---|
| ID | 5103727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 518778 |
|---|
| End bp | 519773 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640506471 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_001190666 |
|---|
| Protein GI | 146303350 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAATG CACTGATTAC TGCCTGGGCC ATTATAAAGG ATAACCTGAG CAGTAAAACT
ACCCTGTTCT TCGTAATCTT CTTCCCGCTT TTCCTGACCC TCATTTTCGC GCTAGGATTT
GGTGCTGCGG CTGAACCCCA TGTGGTGGTT GTGGTCAATG GAAACAATTC CCTCGCGGGC
TACCTAAATC ATACCGAACT GTTTACGGGC GTTGTTGGGT CAAACGAGAG AGAAGCCCTT
ATCCACAATT ACATTTACGT AGAAGTGAAC GGAAGTAAGG TAAGCATATT TTACCCACAA
GAGGATAACT ACCTGGTGCC CTCCCTTGAG GCCATAATCC AGGACTACCT CTCCGGTACG
AATACGGTCT CCTTCAATAT CTTATCACAA CAGGGATTTA CCTATTACGA TTACGTGATC
TCCGGCATGA TAGGAGTTAT TTCCCTTTCA AATGGGGTAT TTGGGGTCAC GGGAGTAGCC
GCAGGATATT ATAGGGATAA ACTGGTTGAT AGGATAGCTG CGTCTCCTCT CAAGAGCTAC
GAGTGGGTTA TGGGTCTCAT AATTTACGAG ATCGTAATAA CCTTAATTTC CACCGTTCCC
ATCCTTCTCC TGGGCCTCGC CTTTGGATTT CTACCCCTTA TCAGTGTATC GTTCGTGGCA
TTCCTAGCCA TCTCTACGCT AATGTTTGCC GGTCTGGGTG CAGTTATATT TGGCCTAAGC
CCAAAGGACA AGCTGTTTGT GGCTCAGACC GCGGCTAACG TCCTAGTTTT TCCCCTAATG
TTTCTAAGTA ATGCCTTCTT CAGCCTCAGT GCATTTCCAC CTCTCCTCAA GCCCATAGTA
GCCTATCAAC CCCTTTCCAT AATAAATGAC GTCATTAGGG ATCTTGTCGT ATATAACGTT
CTACCTCCCC TGTTTGACAT AGGTTACATT GCAGTTCTCA CAGTGGGTTT AGTATATGTG
GGAGGAAGGC TAATGAGATT ACGAGAAACC GACTGA
|
|---|
| Protein sequence | MRNALITAWA IIKDNLSSKT TLFFVIFFPL FLTLIFALGF GAAAEPHVVV VVNGNNSLAG
YLNHTELFTG VVGSNEREAL IHNYIYVEVN GSKVSIFYPQ EDNYLVPSLE AIIQDYLSGT
NTVSFNILSQ QGFTYYDYVI SGMIGVISLS NGVFGVTGVA AGYYRDKLVD RIAASPLKSY
EWVMGLIIYE IVITLISTVP ILLLGLAFGF LPLISVSFVA FLAISTLMFA GLGAVIFGLS
PKDKLFVAQT AANVLVFPLM FLSNAFFSLS AFPPLLKPIV AYQPLSIIND VIRDLVVYNV
LPPLFDIGYI AVLTVGLVYV GGRLMRLRET D
|
|---|
| |