Gene Msed_0500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_0500 
Symbol 
ID5103661 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp454262 
End bp455908 
Gene Length1647 bp 
Protein Length548 aa 
Translation table11 
GC content47% 
IMG OID640506405 
Productcytochrome b/b6 domain-containing protein 
Protein accessionYP_001190600 
Protein GI146303284 
COG category[C] Energy production and conversion 
COG ID[COG1290] Cytochrome b subunit of the bc complex 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.847294 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTTAA CAAAAAGGGT TTCAAACTGG TTTTCGGAGA GACTAGGATT AAATGACCTA 
CCTTTCTTCA AGACTCCAGA CTACATGTAT CACGTTAACG AATGGTTAGG CGCGTTGGTC
GCTGCATCAT TTATCTACAC CGTGATATCT GGCCTAATAC TTCTGCTATA TTATAACGCA
GCAGCAGGTT ACCAGTCAAC TGAGACCATA ATCAATCAAG TGCCCTATGG GTCCGTGGTG
CTCTATAGTC ACCTATATGG CTCCTACGCC ATGATTATCC TGGCTTACGT TCACATGTTT
AGGAACTATT TCGTGGGAGC ATATAAGAAG CCAAGGGAAC TCCTGTGGAT ACTCGGCGTT
TTAATGCTCG TCCTCACCCT AGGAGCTTCC TTCCTGGGAT ATAGCCTTAT TGGGGACGCC
CTCGCAGTTA GCGCTGTTGA CGTTGGTGCC GGAATCATCA CCTCAATTCC GCAACTGTCC
TTCTTAATAC CCATCATCTT CGGGAATTAT GACACTGGAG ACTACACGAG AGTACTTGCG
TTGCACATTA TCCTAGTGGC TTTAATAGGT CTACTTTTCG TGTTCCACTT CTTCCTTGCG
GAGCAGTATG GAATGATGCC CTCAAGGAAG GTAAAGCCAA AGGCGCCTGC GGTTTACACC
AAGGAGGAAT GGTCTAAGTT TAATCCATGG TGGCCTAGGA ACTTCGTTTA CATGAGCTCG
CTGATTTTCA TGACTTGGGG TTTCATTCTA GCTATCCCGA ACGCGCTAGC CTACCTAAAC
GGACTGCCAC AATACTTCGA TCCCTTCATG AACCCGAAGC CAGCTCCTCC ACCCAACAGC
CCTGCTGCAG CGCATATTAC AACCTATCCA CCGTGGTTCT TCCTGTTCCT CTACAAGATC
GCAGACTTCA CCAGTGACGT GGTAATATTT CTAATGATAG GTGTAATAAT ACCACTGGTA
TACCTCATCA TCTTGCCATT CATAGATAGA AGCGACGAAC TTCACCCGCT CAAGAGGAAG
GTATTCACTG GGATAGGTAT CCTCATGATT ACGTACCTTA TACAAACCTC CCTGTGGGGA
GATCTTGCTC CCGGAGTTGA AGTAAGTATT AAGGAACAGG TTATCGCTTA TCTCATACCG
GCAATTATAG TAGCTCTAGG TTTAACCTTC ATTAAGCCAA TGGACGTCAA GACGAAACAG
GTCAGAGGAA TATCACCCCT TACATCTCTA CTCTTCGTGG TGGTGGCAAT GTTGTTCGCT
GGTTCCGTCG TGGAGCTAAT CGACTATCCA AGCCTGTTTA CCTTTGCGGT CACGCTATTC
ACGGGCTCGC TATTCTTTAT AGGAAGTAAG ACCATGGGCA AGGTAGTTCT GAGTAAGGGT
TTTCCCAACA ATGCTGTACC TGAAGTCAGA ACAACCACTG AGACTCCCAC CTCCAATGAG
ACCAAGAGGA AGTTCGCGGA GGTTCTCATG AGCATTCTCT TCATTCTAGT TGTGATAATA
GTGGCGCAAA TGTGGACTAT CCCTCCAACT GGCTATGCCT CAAACCTGTT CGGAGTGGAT
CTGGGACTGG TATTTCTAAT GCTGGGAGAG GTAATCTCTC TCTACCACTA CGTGGTCTAC
AAGAAGCCCG TTGAGAAGGA AGAATAA
 
Protein sequence
MSLTKRVSNW FSERLGLNDL PFFKTPDYMY HVNEWLGALV AASFIYTVIS GLILLLYYNA 
AAGYQSTETI INQVPYGSVV LYSHLYGSYA MIILAYVHMF RNYFVGAYKK PRELLWILGV
LMLVLTLGAS FLGYSLIGDA LAVSAVDVGA GIITSIPQLS FLIPIIFGNY DTGDYTRVLA
LHIILVALIG LLFVFHFFLA EQYGMMPSRK VKPKAPAVYT KEEWSKFNPW WPRNFVYMSS
LIFMTWGFIL AIPNALAYLN GLPQYFDPFM NPKPAPPPNS PAAAHITTYP PWFFLFLYKI
ADFTSDVVIF LMIGVIIPLV YLIILPFIDR SDELHPLKRK VFTGIGILMI TYLIQTSLWG
DLAPGVEVSI KEQVIAYLIP AIIVALGLTF IKPMDVKTKQ VRGISPLTSL LFVVVAMLFA
GSVVELIDYP SLFTFAVTLF TGSLFFIGSK TMGKVVLSKG FPNNAVPEVR TTTETPTSNE
TKRKFAEVLM SILFILVVII VAQMWTIPPT GYASNLFGVD LGLVFLMLGE VISLYHYVVY
KKPVEKEE