| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0468 |
|---|
| Symbol | |
|---|
| ID | 5105464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 422976 |
|---|
| End bp | 423956 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640506374 |
|---|
| Product | signal-transduction protein |
|---|
| Protein accession | YP_001190569 |
|---|
| Protein GI | 146303253 |
|---|
| COG category | [R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1245] Predicted ATPase, RNase L inhibitor (RLI) homolog
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.125396 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCCCA TAGTTCTGAT AGACGTGGAT AGATGCGTAG GATGCTACAT GTGCCAGAGG
GCCTGTGCCC TGGCTCAGTG CATAGAGATC AACGAGGTGA CTAGATTTGC GGAGGTTGTT
AGGCCCGAGG ATTGTACCGG TTGCATGGCC TGCGAAAGGG CATGTCCATA CGACTGCATA
GTTGTGGTAA GCGACGAGTC ACAGGTCCCC TTGAGGGCAA AGATCACCCT TTCCAGGGTA
AGGAGATATG CCACGAAGAG ACTGGTGTTG GGTGATCCAA GGTGGAGCGT GAGAAGGGGA
GCCGAGGAGA TGACTAAGGA AGGTGTGGGA TCTCTCCTGC TGATGAACGG AACCAAGATC
GTTACTGAGA CCGACGTACT GGAGGCTTGG ATAGGTGGCA GAGAGGAGGA GCCACTAATC
AACTTCTCCA AGGACGCAAT AACCATTGAG GGAAAGGCTA CGGTTGAGGA AGCCCTCAGG
ATCATGCTTG AGAAGTGTAT TAGTCATTTG CCTGTCATAG AGAGAGGGAA ATTATCAGGC
ATGATATCCC TCAGGGATGT GTTGAGGGCT TCTTCCGTGA CCTCTCCAAT ACTTGACGAG
AGTATTCTTC CCATAAATCC TAGGGAGAAA ATTGAGAAAT ACGCGATTCA GGTTCCTGTC
GTAGGGAAGG TAACTAACAG GGAGCTATAC TCTATCCTTA AGGAGAGGAA ACTTAAGGCT
ACCGTAGTGA GAGAGGGTGA GAAGGTAGGT TTGATCTCAA TAAGGGATCT AACCAAGGCC
ATGGCTAAGG GTAAAAGTCT AGATGATTTG ATAGATCCTA GATGGATAAA TCCTGTATCC
TCAGAGGAGC AGATTTCTAA GGCAATAGCA ATAATGATGG AGCATAACCT AAGGCATCTG
CCAGTGTTCC AGGGGGCAGA ACTGAAGATG CTCAGCGTAA AGGAGATAGC CAAGCACGCA
GTGTGGATCA AAGTGACATG A
|
|---|
| Protein sequence | MDPIVLIDVD RCVGCYMCQR ACALAQCIEI NEVTRFAEVV RPEDCTGCMA CERACPYDCI
VVVSDESQVP LRAKITLSRV RRYATKRLVL GDPRWSVRRG AEEMTKEGVG SLLLMNGTKI
VTETDVLEAW IGGREEEPLI NFSKDAITIE GKATVEEALR IMLEKCISHL PVIERGKLSG
MISLRDVLRA SSVTSPILDE SILPINPREK IEKYAIQVPV VGKVTNRELY SILKERKLKA
TVVREGEKVG LISIRDLTKA MAKGKSLDDL IDPRWINPVS SEEQISKAIA IMMEHNLRHL
PVFQGAELKM LSVKEIAKHA VWIKVT
|
|---|
| |