| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0321 |
|---|
| Symbol | |
|---|
| ID | 5105479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 275721 |
|---|
| End bp | 277253 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640506227 |
|---|
| Product | cytochrome b/b6 domain-containing protein |
|---|
| Protein accession | YP_001190422 |
|---|
| Protein GI | 146303106 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1290] Cytochrome b subunit of the bc complex |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGAGGAAC AGGAAGGGAC CTGGCTTGAC AGGGTCCTGG AGTGGCTCGA CGAGAGGACA
GGTCTATATG GTCACACCAT AAGGCAAGCT CCGCGTTATG CGTACAGGCT TGATTTTTGG
TTGGGTTCCT TTGTCTTAGC ATCCTTTATG TTTGAGGTTA TAACTGGGAT GCTTGTGGCC
CTATATTACG TTCCAGCTGA TCCCTATGCG TCAACCTCCT ACCTGATATC TAACGTTCCC
CTGGGAGCTC TCCTCTTTAG TCTCCACAGC TGGGGAGCTT ACGCCATGGT ATTTCTCCTC
CTGGTTCACA TGACCAGGAA CTTTCTGGTG GGAGCGTACA GGAAACCTAG GGAAATAATG
TGGGTGGTGG GAACAGTGCT CGCAGGGTTA ACGTTGACTG AGGCTTACCT GGGCTACTCG
CTTCCTTACA ATTTGATCTC CTGGACTGCG ACGACGACTG GACTGAACCT CTTTACCTAC
ATGCCCCTAG GTTTAAGCAA CCTAATAGCT GCCATGACCC TTCTGCCCCA GCTACCAGGA
ATTGCGAGCG GGGTAGATCC CCTTGTGGAT AGGTTCTTTG TGTTCCACTG GATAGTTGGG
GCCCTAATAG CTCTGGTGCT AGGGCTTCAC CTTTACATAT TCGAGAAGCA TGGCATAACT
CCACCCCTAA GCAAGGAGAA GGGGAGATCC GAGCTCATAG ATGATTACCA GGACAAGCTT
AGGAATGACC CGAACTGGAA ACTTCAGCCC CTGACCAGGA CCTTTGGGAT AATAGTGGTT
ACCATGTTAA TGACATTTGG AGCCATCTTC CTGATAGCCT CAGCTTTCCC GTTCCAGATC
GCGGTTGACG GCTCTACGAT CAAGTATATT ATGCCAGAGT ATAATCCCGC ACTGGCTGCG
CAGACTCCCC CAATACCTGA CTGGTATTTC CTGTTCATCT ACTTCTTCTA TAAGTCTGTG
ACTCCGTCAA ATGCGTCGCT CATTTTCCTG GCATGGGGAG CTGTGACAGT CCTATTCCCG
TTCGTGGACG AGTACGTGTT CAGACATGAG TCTCCTAATC CCGTAATGAG ACCTGCTTCC
ATGGCTCTAG GGGTTGGTTT CATCGTCTCC TTCGTGGTTA ATAGCGTTTG GGCATATCTA
ACTCCTGGGA GGGATATAGG ACCCATAGGG ATCGAGGTAG ACGGCGTAAT ATTTCTGCTG
TCCTTCCTCA CAATCTTCCC TGCCCTAAGG TGGTTGCAGT CTAGGGCCGA GTCAGGGTCC
GACTCATTCA ACCTGGGGAA GAGGTTGGGG TTGGCGAGTG CCCTGTCGAG GTCTCAGGAA
GTGAGCACAA TCACGCTACC CAGGCCAGTA TCCCTGGGGG TTGACCTAAG CATCTTGGCA
ACCCTAGGCC TAATAGCTTA CACTACGGCT AAGATGTTCA CGTTGACTAA CCTACTCCTA
GACCAGTTTG AGCTTGGGAT ACTCGCAGGT ATTAACATGT TCCTTCTGTC CTACCTTGTG
CTGATCTATT CCTTAAGGGG TGATGAGAAG TGA
|
|---|
| Protein sequence | MEEQEGTWLD RVLEWLDERT GLYGHTIRQA PRYAYRLDFW LGSFVLASFM FEVITGMLVA
LYYVPADPYA STSYLISNVP LGALLFSLHS WGAYAMVFLL LVHMTRNFLV GAYRKPREIM
WVVGTVLAGL TLTEAYLGYS LPYNLISWTA TTTGLNLFTY MPLGLSNLIA AMTLLPQLPG
IASGVDPLVD RFFVFHWIVG ALIALVLGLH LYIFEKHGIT PPLSKEKGRS ELIDDYQDKL
RNDPNWKLQP LTRTFGIIVV TMLMTFGAIF LIASAFPFQI AVDGSTIKYI MPEYNPALAA
QTPPIPDWYF LFIYFFYKSV TPSNASLIFL AWGAVTVLFP FVDEYVFRHE SPNPVMRPAS
MALGVGFIVS FVVNSVWAYL TPGRDIGPIG IEVDGVIFLL SFLTIFPALR WLQSRAESGS
DSFNLGKRLG LASALSRSQE VSTITLPRPV SLGVDLSILA TLGLIAYTTA KMFTLTNLLL
DQFELGILAG INMFLLSYLV LIYSLRGDEK
|
|---|
| |