| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0290 |
|---|
| Symbol | |
|---|
| ID | 5104926 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 245965 |
|---|
| End bp | 247617 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640506196 |
|---|
| Product | cytochrome-c oxidase |
|---|
| Protein accession | YP_001190391 |
|---|
| Protein GI | 146303075 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0048384 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.666159 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTC AAGTCAAAGA TATTTTAAAA ATGGTTTCCA ATTACCTTAG TATTTTTTCT
GCCTCTAATA TAAAGAAAGT GCTGTTCCCA TCGACTACCT CTGGGGTCAT ATGGCAATAC
TTTGCTGGTT CTCTGGCATG GCTAGCGGTA GTAGGTATGG CAGCTATGAA CCTCAGGACC
TACCTAACCT ACCCTTCAAA CAGTCCTGAG GTTGGAGTCA CTTACTATGC CTTCTTAACC
CTTCATGGCT GGTCAGCCAT GCTGGGGCTA GTGCCCTTCG CTGCGATATC CGTGATAGCT
TACTCCATGT ACAAGGACGG AATGAGCATC AGGAGAACAA AATTGATGAG TGGGATGTTT
TGGCTAGCCA ACGCAGGCCT CATCTTCGCT CTCCTCGGAG GACCAGACAT GGGGTGGTAC
ATGTACCCGC CCCTGGCTGT AGAGGACAAC TCCAATTTTC ATGCTTTTCT TAACTATCAC
GGAGCATTAA TGGGTATAGC CTATCTCGCC TTGGCCTTAA GCTCATTGGC TCAGACCATT
GCCACTGTTA ACTTGGTAAG CGATGCCTAT GCGACCAAAC CCAAGGGACA GAAACTGGGG
ATATTCTCAG CCTACGGTGT AGCCTTTGCG GTCATTATTG CGTTAACTTT ACCAGCGTTA
ACAGCGGGTG AGTTGTGGTA TACCCTTAAC ATTCTAGCAG GGGTCCCAAT CAACACCTTA
CTATGGCTAG TGCTTTTCTG GTTCTACGGT CACCCCGTAG TGTATTATGT GCCTTTCCCT
CTGTTCGGTG CACTTTACTA CTTTGTTCCC AAGTTTTCAG GGAGGCCCCT ATTCAGCGAA
AAGTGGGCAA GGTGGAACAT TTACCTCTTG GCCATTGGTT CCATGTTGAT ATGGGTTCAT
CACCTCCAGA CCTTCCCAAT TCCGGTCCCG GTGAGGCTAT GGATAAACCT GTCGACCTTG
GTGTTGGCTT CTGGTTCAGG TTTAACGGTG CTTAACCTTG GTTTGACGGT TCTAACGAGC
AAGGGGTATA ACTACAAGGA TCCAGTGGGA ATGGCGACCT TAATGGCGCT CATAGGGTTT
ATTCTAGGCG GAGTTCAGGC AGTTCCTCTT CCCATGTTCC CCATCAATCC CATAGTCCAC
AATACTTACT ACGTCGTAGG TCATTTCCAC CTCGTTATCT GGACCCTGAT ACTCATGGGA
TTCACTGCAG TTTTCCTAGA CGTTCTCAGA ACTGTGAGGC CAGGATTTGA CTACAGCAAG
TCGGCAACAA GGCTAATAAA CGCGGGCATA CTTGTGTGGA CCATTCCCTT CGTGATAGTT
GGTTACCTGA TGAGCATGGA AGGCTACATG GGGATGCTAA GAAGGGTTAT TGCTTATCCC
ACGACCTTCT ACCCATACAA TCTTTCAATT TCACTTCTAG CTGAGATAGG GATTGCGGGT
ATAGTTATGG CAGTAGGGTC GGCATTGGTG GAGTTCCTAA CTTACTCTCC CTCCACCACA
GTAAGCGTTT CATCTGGATC TGGATCATCT ACTCCTTCGA TCTCCTTAGC CACAGATCAA
AATGACAAAA AGGGAGAATT TTTTGATAAT CTTAAACTTA AGCTTAATAA CAGTGTTTAT
GGAAAATCTT CCGAATTAAG AAGGGTGAGA TAA
|
|---|
| Protein sequence | MSFQVKDILK MVSNYLSIFS ASNIKKVLFP STTSGVIWQY FAGSLAWLAV VGMAAMNLRT
YLTYPSNSPE VGVTYYAFLT LHGWSAMLGL VPFAAISVIA YSMYKDGMSI RRTKLMSGMF
WLANAGLIFA LLGGPDMGWY MYPPLAVEDN SNFHAFLNYH GALMGIAYLA LALSSLAQTI
ATVNLVSDAY ATKPKGQKLG IFSAYGVAFA VIIALTLPAL TAGELWYTLN ILAGVPINTL
LWLVLFWFYG HPVVYYVPFP LFGALYYFVP KFSGRPLFSE KWARWNIYLL AIGSMLIWVH
HLQTFPIPVP VRLWINLSTL VLASGSGLTV LNLGLTVLTS KGYNYKDPVG MATLMALIGF
ILGGVQAVPL PMFPINPIVH NTYYVVGHFH LVIWTLILMG FTAVFLDVLR TVRPGFDYSK
SATRLINAGI LVWTIPFVIV GYLMSMEGYM GMLRRVIAYP TTFYPYNLSI SLLAEIGIAG
IVMAVGSALV EFLTYSPSTT VSVSSGSGSS TPSISLATDQ NDKKGEFFDN LKLKLNNSVY
GKSSELRRVR
|
|---|
| |