| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0206 |
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| Symbol | |
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| ID | 5104072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 169092 |
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| End bp | 170189 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640506111 |
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| Product | tRNA pseudouridine synthase D, TruD |
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| Protein accession | YP_001190307 |
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| Protein GI | 146302991 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0784918 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0319695 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGAATGA GTTTACTGGA CTTAGCAATA GGAATAGAGT TTAAGGTGCA TAGATGGGCT
TCAATTCGTG CAGAAATTCC AAGGCCTGAC GGCTTTCGGG TAACGGAGGA GATTGACGGA
AAACCGTGTA CAGCCTGGAG AGGATCAGAG AGTGGCAAAT ATGCCGTTTA TCTCCTGAGA
AAAAGAGGAA TGGAACATAA TGCGGTTATG TCCAGGCTGG CCTCTATTCT CGGTGAAAAA
CCAAGGTACC TAGGAATAAA GGATACTAAT GCAGTTACGG AGCAACTAAT ATACGTAACG
AGGAAGTCAA AGGATTTCCA CAGGGAGGAG TCCTTTTCCA TAGAGTTCAT GGGATTCACT
TCGACAAAAC TGAACCACAC CGGTAACATT TTCTCCATAA AGCTTGAGAC AGGGGATAAG
GAGGAGCTCA AAAGAAGGGT CAACACCATA AAGGGTGAAG GCGTTTTACC AGCCTTCATA
GGGTATCAAA GGTTTGGAAC CAGAAGACCC ATAACGCATC TGGTAGGGAA GGCCTTAACT
CAAAGGGACT GGTGCAAGGC GGTGGACTTC ATTCTAGGTT ATCCCTTCGT GTGGGAGAAC
GAGAACATCA GGCTATTTAG AGAGGAATAC ATGAAAGGGG AGGTAAAAGA GGAACTTCTC
AGGAAGATAC CGAGCCAGGA GAGAAACATT TACCTTGAGT TGAGGAAGAC CGAAGATTGC
CTCTCTGCTC TCAGGAAATC GCGGGTTAAA CTTAGCTTTT ATGTGGAGGC TTATCAAAGT
TACCTTTTCA ACAGGGTGCT ATCCAGGAAA CTAAGATATT CCACAGTGCA CGAGAGGGAT
GAGATAACCA TTCCCACGGA TCCCAAACAA TGCGACGCAG AGTGCCTGGA AGTCTTCGAG
GTTGAAGGGA TACAGAGGGG CAGTTTCCAC ATTGAGGAAC TGGGAATATC CCTTAGACCT
GTGAAAAGAA ACGCTTTCAT GAATGTCAGA GGCCTGCATT TTGACGGCGA GTTCGTAACG
TTTTCCTTGG AAAGAGGGAT GTATGCAACT GTGGTTCTAT CTGAGATCCT AAACGCCGAT
CCAAAAGAGT TCACTTGA
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| Protein sequence | MRMSLLDLAI GIEFKVHRWA SIRAEIPRPD GFRVTEEIDG KPCTAWRGSE SGKYAVYLLR
KRGMEHNAVM SRLASILGEK PRYLGIKDTN AVTEQLIYVT RKSKDFHREE SFSIEFMGFT
STKLNHTGNI FSIKLETGDK EELKRRVNTI KGEGVLPAFI GYQRFGTRRP ITHLVGKALT
QRDWCKAVDF ILGYPFVWEN ENIRLFREEY MKGEVKEELL RKIPSQERNI YLELRKTEDC
LSALRKSRVK LSFYVEAYQS YLFNRVLSRK LRYSTVHERD EITIPTDPKQ CDAECLEVFE
VEGIQRGSFH IEELGISLRP VKRNAFMNVR GLHFDGEFVT FSLERGMYAT VVLSEILNAD
PKEFT
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