| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0174 |
|---|
| Symbol | |
|---|
| ID | 5104963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 140121 |
|---|
| End bp | 141041 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640506077 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_001190275 |
|---|
| Protein GI | 146302959 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.10516 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.125028 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCTCAG TTGTTACTGG AGGAGCAGGT TACATAGGAG GACATCTAGT GGATGCCTTA
CTTCAACAGG GCAATCAAGT CCTAGTGCTG GACGATCTTT CAAGTGGTAA CTACATTAAT
TCCATGGCTA AGTTCCAGAG GATAGATCTT CGGTCACAAT CCCCTAAGCT TGAGAGTTGC
GACACAATGT ATCACCTAGC AGCTAACCCA GACGTGAGAA CGTCCATGGA GAACATTGAG
GAACATTTCG AAAGGGATGT AAAGGCTACC CTTAATGCAC TAGAGTCGGC AAGGAAATCA
GACTGCAAGT TCTTCATCTT TTTCTCGTCT TCTACAGTGT ACGGGGAGGC AAAGACCCCC
ACCCCAGAGA CTGCGGAGAC AAATCCAATC TCCAACTACG GTCTCTTCAA GTTAATGGGG
GAAGAAATGA CGAGGTTCTA CTCTCAGAAT TATGGGATAA CGGCCCTATC CCTAAGGCTA
GCAAACATTA CGGGTGGTAG AGTTTCTCAT GGCGTAGTAA TAGATTTCAT TAAAAAGTTA
ATGAAAGACC CCACAACCCT CGAAATTCTG GGAAATGGGA AACAGCGCAA GAGCTACCTT
CATGTTAGCG ATCTTATTCA GGCGGTTCTT TTCCTTAAGG ATAGACATAG GCGAGGATAC
GATTACTTCA ATGTGGGGAA TGAGGATTGG ATCACCGTAG ACGAGATAGC TAGTATCGTG
GAAGAGGAAA TGGGACTAAG GCCTGTTCAT GTGTACCGGG ATGCAGATAA CGGAAGGGGC
TGGAAGGGAG ACGTGAGATT AATGTTGCTT GACATCTCTA AGATAAAGTC CCTCGGTTGG
GCACCGACTC TCTCCTCTAG GGAAGTGATT AGACGGGCCA CGAGGGAAGC ATTAAGGTTG
TTAGGCTATG AGAAGGTTTA G
|
|---|
| Protein sequence | MVSVVTGGAG YIGGHLVDAL LQQGNQVLVL DDLSSGNYIN SMAKFQRIDL RSQSPKLESC
DTMYHLAANP DVRTSMENIE EHFERDVKAT LNALESARKS DCKFFIFFSS STVYGEAKTP
TPETAETNPI SNYGLFKLMG EEMTRFYSQN YGITALSLRL ANITGGRVSH GVVIDFIKKL
MKDPTTLEIL GNGKQRKSYL HVSDLIQAVL FLKDRHRRGY DYFNVGNEDW ITVDEIASIV
EEEMGLRPVH VYRDADNGRG WKGDVRLMLL DISKIKSLGW APTLSSREVI RRATREALRL
LGYEKV
|
|---|
| |