| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_0162 |
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| Symbol | |
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| ID | 5105015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 130836 |
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| End bp | 132611 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640506065 |
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| Product | hypothetical protein |
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| Protein accession | YP_001190263 |
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| Protein GI | 146302947 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.222598 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0745617 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAACAT TTGACAGATA TACGCCATAC ATAATTCTCT TGCTTCCAAT AATCTTGGCA
TTAGTATTTA GGAACCCTTT TCTCCTCTCC CTATCTGGTA TATTATTGGT TCTAATGCTA
TATACTGGCT CAATAAAGAT TCCTGTAAAT ATTAGTTTTC CAATAAAGAG AGGAGATGGA
ATAGCGCATT CGATAGAAAA GGGGTTGATT ATTCGAGGTA ATTCTGCTAT TGGGGTTGTC
ATCGTAGACG ATATCCCCTA TGATTATAGG GATCTTTCGG ACTCATCATT AAGGGCCTCG
ATAAATGCCT TTCATAAAAT AACCAATATA GGGGAACATG TGGATATTAT TTTCAGGAAA
AAATATATCG ATCAGAGAAT ATATACCGAA AGATTACTTA ATAAATTACA AAATCTCAGA
ATAATAATAG AAAATGACCC ATCTAATGCC AAGGCAAAGA AGGAGATGGA ACTTCTTCAG
AGTATTTTAG ATAGGTTGGA GCAAGGAGAG AAACCTTTCT CGTATCAGGT AGTTCTGTTA
GTCCATGGAA AGGATAAGCA AGAGGCGAGA AGTCTCGGTG AGGTTCTCAT AAGGGGTTTA
GAGAGCCTCA ATATCAAATC GAGGTTCGCC ACAGTCAAGG AGATAGAGGA TATCCTATCT
CTTAACCTTA CTAGGTTTAG GAAAGAGGGA TTGCCTTCTC AAATACCATT TCTAACTCCA
TTCTCCCTAG AGAAGATGCC GGTGGTCGAG AAGTGGAGCG ATGGAGTATA TCTAGGAAAG
GATATGGAAA GGCAAGTTCC GGTATTCTGG AATGTGGAAA AGTCCGAGAA CCCTCACATC
ATGATAATAG GTCCAACTGG ATCTGGAAAA ACTGAGTTAC TGATTTGGCT CGGGAGCCTA
ATGTCCCTAC AATATTCAGT TCCAGTTGTA TTTTTTGACG TAAAGGGAGA TATTAGGACG
AGGTTGAGGA GATATGGCTT CAACTTCAAG GTTCTGAATC CTCTTTTCTA TTCACTGAAG
TTACTGGACT TTCCCTACGT GGCCCCGTCA ATAAAACCAT TGTTTATAGA AAAAATAGTA
GGAGTTTCAT TTAAGCTAAA TCGCGAAGAA AGGGCAATAC TTTTCAATGT GTTGAATAGG
CATTTGAAGG AAACCCATGG GAGGCCTGAG TGGAGAACCA TACTAAGGTA TGAGGAAATA
GGAGACAGAT ATTCCATAAG GAGATCCTTG GAACTAGTAG AGTCTTTTGA CTCTGACGGT
CCGTTTATCT TGGACGGTAT GACGCATGGA ATAAACGTAG TGGACCTAAC TCAATTAAAG
GATGAGACTC TGAGGAGATT TGTCATATAT TCCTTTATAT CAATGCTTTA TGCATACTAC
TCGTCCGATG CCGATGTCGG TCTCAGGGTA GGTTTGGTAG TGGATGAGGC GTGGACAATT
CTTAAGGACG ATGACGAATA CGGGATAATA GGTGATCTAA TAAAGAGAGG CAGGGGTCAT
GGTATATCCT TATTAATGGC TACTCAGAAC ATCCAGGATC TTGGACAAAA CGCGGACATA
TTCATGGATA ACATAGGTAC CCTTTGCTTC ATGAATAATG GGGATAAGAA TTTCTGGAAG
GATGTGGTTA AGAGGTATTC CAATATTCTG GATGGTGAAG TTGAGAATAA ACTGGCATTC
CTAGGTAGAG GGGAGATGTT GGTCAGATTC CTGGGAGATC CAAGGCCAAT CCTTGTGGCC
CACAAACCGT TAACTGGAAG CTCTTTCCAG AATTGA
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| Protein sequence | METFDRYTPY IILLLPIILA LVFRNPFLLS LSGILLVLML YTGSIKIPVN ISFPIKRGDG
IAHSIEKGLI IRGNSAIGVV IVDDIPYDYR DLSDSSLRAS INAFHKITNI GEHVDIIFRK
KYIDQRIYTE RLLNKLQNLR IIIENDPSNA KAKKEMELLQ SILDRLEQGE KPFSYQVVLL
VHGKDKQEAR SLGEVLIRGL ESLNIKSRFA TVKEIEDILS LNLTRFRKEG LPSQIPFLTP
FSLEKMPVVE KWSDGVYLGK DMERQVPVFW NVEKSENPHI MIIGPTGSGK TELLIWLGSL
MSLQYSVPVV FFDVKGDIRT RLRRYGFNFK VLNPLFYSLK LLDFPYVAPS IKPLFIEKIV
GVSFKLNREE RAILFNVLNR HLKETHGRPE WRTILRYEEI GDRYSIRRSL ELVESFDSDG
PFILDGMTHG INVVDLTQLK DETLRRFVIY SFISMLYAYY SSDADVGLRV GLVVDEAWTI
LKDDDEYGII GDLIKRGRGH GISLLMATQN IQDLGQNADI FMDNIGTLCF MNNGDKNFWK
DVVKRYSNIL DGEVENKLAF LGRGEMLVRF LGDPRPILVA HKPLTGSSFQ N
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