| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4579 |
|---|
| Symbol | |
|---|
| ID | 5106890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 5023930 |
|---|
| End bp | 5024841 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640505850 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001190058 |
|---|
| Protein GI | 146309593 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAACC GCATGGAGAT GATCCGCATC TTCTGCAGCG CGGCCGACTG CAGCAATTTC
CGCGAGGCAG CGACTCGCCT GGGGGTTTCG CCGCAGGCGG TGACCCGTGC GATCAAGGCG
CTGGAGGAGG AACTGGGCGA GATTCTGTTC CACCGCAACA CCCGCCAGGT GCATATAACC
GCCTTCGGCG AGGCCTATGC GCTGCGCGCC CGGCAGATGC TGGAGGATTT CGACGCGCTG
TTTCGCGGCC ACCGCGCCGA AACCGAATCG GTCATCGCCG GGCGCATCGG CATCACCGCG
CCGCAGGCCA TCGGCAAGCG CTTTCTGGTG GGCTTCCTGC AACCCTTGCT CAAGCAGCAT
CCACAGCTGG TGCTGAACCT GCGGCTGGAG GACGAGATCA CCGACGCGGT GGAGGCGCAG
ATCGACATCG GTATCCGCGT CGGCTTTCTG CGTGACAGCC GCTACGTCGC GCGCGCCTTG
GCGCCGGTAC CGTTGCTGGT GGTGGCTGCG CCCGAGCTGA TCACTGCCAC TGGCGAACCA
AGTGATCTCG ATGAATTGCA GCAGCGGCCG CTCTCGGTGC TGATCGACCG CAAGACCGGC
CGTCCCTGGC CGTGGACCTT CGCCCACGGC CCCAGCCTGC ATCCACCCGC GCCAGCGTTG
GTATGCGACG ACCCCGAAGC CGAGCTGGAG GCCGTGCTCG CCGGCCTGGC CTACGGCCAG
TTGCCTGCCT ACCTGGCGCA GCCCTACCTG AAGAGCGGCC GTCTGCAGGC GGTGCTGACC
GAGCAGGCAC CCGATCCCTG GCAGCTGTTC ATCTACCGCC CACAGCAAGG CCCGGTGCCG
CCAAGGGTGC GCCTGGTGTT CGATCACCTG CGCACCTGCT TCTCCGACCC GGCGCAGTTT
CCCCAGGGCT GA
|
|---|
| Protein sequence | MLNRMEMIRI FCSAADCSNF REAATRLGVS PQAVTRAIKA LEEELGEILF HRNTRQVHIT
AFGEAYALRA RQMLEDFDAL FRGHRAETES VIAGRIGITA PQAIGKRFLV GFLQPLLKQH
PQLVLNLRLE DEITDAVEAQ IDIGIRVGFL RDSRYVARAL APVPLLVVAA PELITATGEP
SDLDELQQRP LSVLIDRKTG RPWPWTFAHG PSLHPPAPAL VCDDPEAELE AVLAGLAYGQ
LPAYLAQPYL KSGRLQAVLT EQAPDPWQLF IYRPQQGPVP PRVRLVFDHL RTCFSDPAQF
PQG
|
|---|
| |