| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4442 |
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| Symbol | |
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| ID | 5107137 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 4868296 |
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| End bp | 4869426 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640505713 |
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| Product | twitching motility protein |
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| Protein accession | YP_001189921 |
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| Protein GI | 146309456 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGATA CGCCAACAGA CGAACGCCCC GACGTTCTGC CCTATCTGCA GCTGATGCAT
CAGCAAGGCG GCTCGGACCT GTTCTTCAGC GTCGGCGCGC CGCCGCACAT GAAGGTCGAA
GGCCATAGCC AAGCGGTTGG CCAGCGCGTG CTCAAGGCCG GCGAGGTGCA GCAACTGGCC
TACCAGTTGA TGAGCCAGAA GCAGATCGCC GAGTTCGAGC GCGACCTGGA GATGAACCTC
GCCGTCAGCC TGCAGGGTGC CGGGCGCTAT CGGGTCAACG TCTATTACCA GCGCGGCGAA
GTGGCCATGG TGGTGCGCCT GATCAAGAGC CAGATTCCCG ACTTCACGGC GCTCGGTCTG
CCCAGGCTGC TGGAAAAGCT GTCGATGCAG GACCGTGGCC TGATCCTGGT CACCGGCGCC
GCCGGCTCGG GCAAGTCCAC CACCCTGGCG GCCATGCTGG ATTTTCGCAA CCGCCACAAG
AGCGGGCATA TCGTCTGCAT CGAGGACCCC ATCGAGTTCC TCCACAGCCA CCAGCGCTCG
ATCATCGACC AGCGCGAGGT GGGTCTGGAT ACCCACAGCT TCGCCGACGC CCTGCGCAAC
GTGCTGCGCG AGGCACCGGA CGTGATCATG CTCGGCGAGA TCCGCGACGC CGCCACCATG
CAGCACGCCC TGCACTATGC CGAGACCGGC CATCTGTGCC TGGCCACGCT GCATGCCACC
AGCAGCAGCC ATGCGGCCGA GCGCATCGCG CGCTTCTTTC CCGACGAGGC GCGCAAGCAG
GTGCTGGCCG ACCTGGCGCA CAACCTGCTG GCGGTGATCG GTCAGCGCCT GGTGCCGGGC
CTGGCGCAGA AACGTGTGGC GGCGGTGGAG CTGATGCTCG GCACGCCCTA TATCCGCGAC
CTGATCCAGC GCGACGAGCT CGAGCAGTTG CGCGAAGCCA CCGCGCGCGC CGCCGAGCAG
GGTCTGCAGA CCTTCGACCA GCACCTGTTC GCCCTGCTCG AAGCCGGCCG CATCGGTCTG
GCCGAGGCGC TCAAGTATGC CGACTCGCGC ACCGACCTCA GCCTCAAGTT CAAGCTCGAG
CGTGGCTTCG CGGCCGACGA CGCCGAACTC AAGGTATTGC GCGACGGCTG A
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| Protein sequence | MNDTPTDERP DVLPYLQLMH QQGGSDLFFS VGAPPHMKVE GHSQAVGQRV LKAGEVQQLA
YQLMSQKQIA EFERDLEMNL AVSLQGAGRY RVNVYYQRGE VAMVVRLIKS QIPDFTALGL
PRLLEKLSMQ DRGLILVTGA AGSGKSTTLA AMLDFRNRHK SGHIVCIEDP IEFLHSHQRS
IIDQREVGLD THSFADALRN VLREAPDVIM LGEIRDAATM QHALHYAETG HLCLATLHAT
SSSHAAERIA RFFPDEARKQ VLADLAHNLL AVIGQRLVPG LAQKRVAAVE LMLGTPYIRD
LIQRDELEQL REATARAAEQ GLQTFDQHLF ALLEAGRIGL AEALKYADSR TDLSLKFKLE
RGFAADDAEL KVLRDG
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