| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4342 |
|---|
| Symbol | |
|---|
| ID | 5107195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4759654 |
|---|
| End bp | 4760484 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640505608 |
|---|
| Product | sigma-54 factor interaction domain-containing protein |
|---|
| Protein accession | YP_001189821 |
|---|
| Protein GI | 146309356 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTTC CACCCGACTT CCCGGCGCCG CTGACCTTCG CCGATTCGGA CAAGAGCCCG
CTGAGCATTC GGGCCAAGGC GCTGGTGTTC GTCGACCCGC GTTCACGTCA GTTGCGCGAG
CGCGCCGAGG TGCTGGCGGG CAATGGTCAG CCGCTGCTGA TCCTTGGCGA GACCGGCACC
GGCAAGGAAT TGCTGGCGCG CTACATTCAC CGGCAGAGCG AGCGTGGCGG CCTGTTCGTC
GCACTGAGCT GCGCGGCGAT CAGCCCGCAA TGGGGCGAGG CCGAGTTGTT CGGCCATGTC
GGCGGCGCCC ATGTCGGGGC CGCCAGCAGC CGCGCCGGCT GGTTCGGTTC GGCCAATGGC
GGCACGCTGT ACCTGGACGA GATCGCCGAT CTTTCGCGCC CGTTGCAGAG CAAGCTGCTG
GCCGCGCTGG AAACCCGCGA GGTGTATCGC GTCGGTGCCA GCCAGGCCCT GCCGGCAGAC
GTGCGCCTGG TGGCGGCGAG CAGCATCGAC CTGGCTCGTG CGGTGGCGGC CGGCACGTTC
GACGAGCGCC TGTACGCCTA CCTGTGCGAC GGCCAGCTGC TGTTCCCGGC GCTGCGTCAG
CGGGTCGGCG ACATCCTGCC GCTGGCCGAG TACTTCCTCG GCATCCACGC CTCGCGCCTG
GGCCTGGGCC TGGCCGTCCC GCCGATCAGC CCGGCGGCGC AGGCCGTGCT GGAGGCGCAC
CGTTGGCCGG GCAATACCCG CGAGCTGGAG AACGTCATTC ACTTCGCCCT GCTGCTGGCT
GGAAATGCAG AGATTGGTCC GGAGCATCTG GAGTTGCCGG GTATTGCGTA A
|
|---|
| Protein sequence | MSVPPDFPAP LTFADSDKSP LSIRAKALVF VDPRSRQLRE RAEVLAGNGQ PLLILGETGT
GKELLARYIH RQSERGGLFV ALSCAAISPQ WGEAELFGHV GGAHVGAASS RAGWFGSANG
GTLYLDEIAD LSRPLQSKLL AALETREVYR VGASQALPAD VRLVAASSID LARAVAAGTF
DERLYAYLCD GQLLFPALRQ RVGDILPLAE YFLGIHASRL GLGLAVPPIS PAAQAVLEAH
RWPGNTRELE NVIHFALLLA GNAEIGPEHL ELPGIA
|
|---|
| |