| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4284 |
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| Symbol | |
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| ID | 5107058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4689008 |
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| End bp | 4691002 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640505550 |
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| Product | lipopolysaccharide biosynthesis protein |
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| Protein accession | YP_001189763 |
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| Protein GI | 146309298 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0126149 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGAAA TTCGTACATT CCGTGATCTG TTGCGCCTGT TCTTTATCTT CTTTCGGGAG
TTCAAGCTGG CGGTAATCGC AACCCTGGTG GTGGTTCTCT TGGGCGCGTT TCTGCTGCCC
ACTTCCTATG AATCCAGCGC GCGCCTGCTG ATCAAGCCGG GACGGGAAAC CAGCACCCTG
CCCATCGAGA TGGCCGACCG CCAGGCGATC GTCATGCCCG GAGCCATGAG AGATCCCATT
CTCGATGAAG AACGCATGCT GACCGGCCGA CCGATCAGTC GGCAGGTGGC CGAGCGCTAC
CTCGAACAGC TGGCCAACGC GCCGAAACCC GATGGTTTCT TTGCCGCCAT CAAGTATGGC
GTGGGCCAGG TGGCCAATGG CGCGGTGGAG CTGGTGCGCG GTTTTCTGCA GCTGATCGGC
CTGACGGAGA AGCAGACGCC GGTCGATCGT CTGGCCACCA AGCTGGAGAA GAAGTTCAGC
GTGACGCACG CCAGTGGCTC GTCGGTGATG GAGATCAGCT TTCGCTGGAG CGACCCGGTC
GTGGCGCAGG CGGTGGTGCA GAGCTGGGTT GAGCTGTACA TGCAGGAGCG TACTCGAGCC
CTGGGCCGCA AGAGCCTGTA TGACTTCTAT CTGACCCAGA GCCAGGCCAG CGAGAAGGAG
ATTCTCGGCT ACAAGCAGCA GCTGGCCGAC AAGCTCAACG AGCTGGGGGC GGTGAGCATC
GACGAGCACC TGCAGGACCT GGCCGAACGC ATCAACCAGC TGCGCAGTGA CCGCTTCTAC
ACATCGCGCC TGATCTCCTC CACCGAGGGC AGCCTCGCCA CCCTCGCCCA GCAGATCCAG
GGGCTGCCAA AGGAAGTCAG TACGGTTCGC GAGCTGTCGC TCAACCCCGT GCACCAAAAC
CTGGTGCGCA TGCTCAACGA CAAGCGTGCC GAGCGTCAGG ACCTGCTTCG CACCTTCACC
GAGAATGCGC CGCCGGTGAA GAGCATCGAC GAGAACATTC TCTACCTGGA GCAGATGGTC
AAGGCCGAGG CCGCGACCGT GCAGGCTTCG CAGAACCTCG CTCCGAACCC CATCGCCGAG
CGTCTGCGCA GCAATCTCAT GGATCAACAG GCCGACCTCG CCCGTCTCAA GGCGCAGCTA
CTGCGCCAGG ACGGTCATCT GGAAAAGCTC GAGCAGGACC GTGCCAGGGC TCTGGCGGCC
GAACCGGAGC TGGCGCGCTT GCAGCGCGTA CTGACCGCTG CAGAGCGAAA CTTCGCGCTC
TACAACGAGA GCCTGGAAAA AGCCCGCATC GATCGGGAAC TGGACGACAG CCGCATCAGC
AACATCGCCA TCATCGAGCA TGCGACGCTC AACCCGAGTC GGGTTTTCCC CAAGAGCCTG
TTGATGATTT TCCTGGCGTT GCCGCTGAGC GTGCTGGTCG GCTTGCTGGT GCTCTATCTC
TGCTACCTGC TCGATCAGCG TATTCATGAT GGGGGGCGCA TCGAAGAGCG CTTCTCCGTT
CCGTTGTGGA CCACCCTGCC CGAGATAGAG GAAGGCAAGC CGGGGCAGAA CACCGCCTTC
CTTGCGGCCT TGTATCGTTT GTATGGTCAG TTGCCGCTGG AGCGTATCGA GCAGCAGGGG
CTGACCTTTG GCCTGACGTC CGCTCGCCGC GGCGAAGGCG TCAGCTTCAT CGTCGAGCAT
CTGGCCAAGC TGCTGGCCGA ACGCGGGCTG AAGGTGCGCG TCGACGGTGA GCAGCCATGC
CAGGCTGGCG AAGTCGTGCT GCTCGATGCC TCCGGCCTGC TGTCCAACCC GCAAGCCTTC
GTGCAGTTGC GCCGCGCCGA CCTGATTGCC CTGGTGGTGG AAGCACAGAA GAGCACGGTT
CCGACCGTCG AGCATGCGCT GGGTGTGCTC TCCACGGCGT TTGGAAAGGT CGATGGCGTG
ATCATCAATC GCCGCCGCTT CGAAGTGCCG ACGCGGGTGC TGCAACTGAT CGCCACAGCC
AGAGGCGCCG TTTGA
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| Protein sequence | MIEIRTFRDL LRLFFIFFRE FKLAVIATLV VVLLGAFLLP TSYESSARLL IKPGRETSTL
PIEMADRQAI VMPGAMRDPI LDEERMLTGR PISRQVAERY LEQLANAPKP DGFFAAIKYG
VGQVANGAVE LVRGFLQLIG LTEKQTPVDR LATKLEKKFS VTHASGSSVM EISFRWSDPV
VAQAVVQSWV ELYMQERTRA LGRKSLYDFY LTQSQASEKE ILGYKQQLAD KLNELGAVSI
DEHLQDLAER INQLRSDRFY TSRLISSTEG SLATLAQQIQ GLPKEVSTVR ELSLNPVHQN
LVRMLNDKRA ERQDLLRTFT ENAPPVKSID ENILYLEQMV KAEAATVQAS QNLAPNPIAE
RLRSNLMDQQ ADLARLKAQL LRQDGHLEKL EQDRARALAA EPELARLQRV LTAAERNFAL
YNESLEKARI DRELDDSRIS NIAIIEHATL NPSRVFPKSL LMIFLALPLS VLVGLLVLYL
CYLLDQRIHD GGRIEERFSV PLWTTLPEIE EGKPGQNTAF LAALYRLYGQ LPLERIEQQG
LTFGLTSARR GEGVSFIVEH LAKLLAERGL KVRVDGEQPC QAGEVVLLDA SGLLSNPQAF
VQLRRADLIA LVVEAQKSTV PTVEHALGVL STAFGKVDGV IINRRRFEVP TRVLQLIATA
RGAV
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