| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4257 |
|---|
| Symbol | |
|---|
| ID | 5107031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4659929 |
|---|
| End bp | 4661020 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640505521 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001189736 |
|---|
| Protein GI | 146309271 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0579] Predicted dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.000000201073 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCACGAAG TCGACACCCT GATCATTGGC GCCGGCGCCC TCGGTCTGGC CTGCGCCGCC
CGCCTAGGCA AGCCCGATAC GCTGATTCTG GAGGCGGAGG GGCTGATCGG CAGCCACACC
TCCAGCCGCA ACTCCGAAGT CATTCATGCC GGCCTCTATT ATCCGCCCGG CTCGCTCAAG
GCCGAGCTGT GCCTGGAGGG CCGCGAACGC CTGTACGCCT GGTGCAACCA GCACGGCGTG
GCGCACCGGC GGATCGGCAA GCTGCTGGTG GCGGTGCAGG AGAGCGAAAT CGGCAAGCTC
GAGGCGCTGG CCGGCAACGC CGAGGCCTGT GGCGTAACGG ATCTGCAGCA GTTCGACCAG
CCACGCCTGC ATGAGCTCGA ACCAGCCCTG CGCGGTGTAC GCGCCCTGCT CTCGCCGAGC
ACCGGTATCA TCGACAGCCA TGCCTATCTG CAGTCACTGC TGGCGGTGGC GGAGAGCCGC
GGCGCACAAC TGGTGCTGCA CAGCCGCGTC GAACGCCTGC AGCGCGACGG CGACGCCTGG
ATCGCCAGCG GCCACAGTGC GGGCGAAGCC TTTACCCTGC GCGCACAACG GGTGATCAAC
GCCGGCGGCC CCTTCGCCCA GCGCCTGGCC CGCACCATCG AAGGCCTGCC GGTGCCGCCG
CTGCACCTGT GCCAGGGGCG CTACTTCAGC TACAGCGGGC GTTCGCCGTT CTCCCGGCTG
ATCTATCCGA TGCCGGAGGC CAATACGGCC GGCCTGGGTA TCCATGCCAC GCTCGATCTG
GCCGGGCAAC TGCGCTTCGG CCCGGACGTG CGCTGGCTGG AAACCCTCGA CTACCAGGTC
GACGAGAAGC TGCGCGCGCC CTTCGCCGCT GCCATCGCCC GTTACTTCCC GGCAATCGAC
GCTGCCCGCC TGCAACCCGG CTATGCCGGC GTGCGCGCCA AGCTCAGCGG GCCTGGGGAA
CCGGCTGCCG ACTTCCTGAT CCAAACCCCT GCCGATCACC GCCTGCCCGG CCTGGTCAAC
CTGTTCGGCA TCGAATCGCC AGGACTCACC GCCAGTCTGG CCATCGCCGA GCGGGTCGCC
AGGGCTCTGT AA
|
|---|
| Protein sequence | MHEVDTLIIG AGALGLACAA RLGKPDTLIL EAEGLIGSHT SSRNSEVIHA GLYYPPGSLK
AELCLEGRER LYAWCNQHGV AHRRIGKLLV AVQESEIGKL EALAGNAEAC GVTDLQQFDQ
PRLHELEPAL RGVRALLSPS TGIIDSHAYL QSLLAVAESR GAQLVLHSRV ERLQRDGDAW
IASGHSAGEA FTLRAQRVIN AGGPFAQRLA RTIEGLPVPP LHLCQGRYFS YSGRSPFSRL
IYPMPEANTA GLGIHATLDL AGQLRFGPDV RWLETLDYQV DEKLRAPFAA AIARYFPAID
AARLQPGYAG VRAKLSGPGE PAADFLIQTP ADHRLPGLVN LFGIESPGLT ASLAIAERVA
RAL
|
|---|
| |