| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4088 |
|---|
| Symbol | |
|---|
| ID | 5106385 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4478179 |
|---|
| End bp | 4479237 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640505352 |
|---|
| Product | biotin synthase |
|---|
| Protein accession | YP_001189567 |
|---|
| Protein GI | 146309102 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0502] Biotin synthase and related enzymes |
|---|
| TIGRFAM ID | [TIGR00433] biotin synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.629007 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAA CCGCCGCAAT CACCACCCGC CACGACTGGA CCCTTGCCGA GGTTCGCGCA
CTGTTCGAGC AGCCGTTCAA CGACCTGCTG TTCCAGGCGC AGAGCGTCCA TCGTCAGCAC
TTCGACCCCA ACCGTGTGCA GGTTTCCACG CTGCTGTCGA TCAAGACCGG CGCCTGCCCG
GAAGACTGCA AGTACTGCCC GCAGTCCGGC CACTACAACA CCGGCCTGGA CAAGGAAAAG
CTGATGGAGG TGGAGAAGGT GCTCCAGGCC GCCGCCGAGG CCAAGGCCAT CGGCTCCACC
CGTTTCTGCA TGGGCGCGGC CTGGAAGCAT CCGTCGGCCA AGGACATGCC CTACGTGCTG
AAGATGGTCG AGGGCGTGAA GAAGCTCGGC CTGGAAACCT GCATGACCCT GGGCAAGCTG
ACCCAGGAGC AGACCCAGGC GCTGGCCGAG GCGGGGCTGG ACTACTACAA CCACAACCTC
GATACCTCGC CGGAGTTCTA CGGCAACATC ATCACCACCC GCACCTATTC CGAGCGTCTG
CAGACACTGG CCTACGTGCG CGAGGCGGGG ATGAAGATCT GCTCCGGCGG CATCCTCGGC
ATGGGCGAGT CGGTGGACGA CCGCGCAGGG CTGTTGATCC AGCTGGCCAA CCTGCCGGAG
CACCCGGAGA GCGTGCCGAT CAACATGCTG GTCAAGGTCA AGGGCACGCC GCTGGCCGAG
GAGAAGGACG TCGACCCGTT CGATTTCATC CGCACCCTGG CCGTGGCGCG CATCATGATG
CCGAAATCCC ACGTGCGCCT GTCCGCCGGC CGCGAGCAGA TGAACGAGCA GATGCAGGCC
CTGGCCTTCA TGGCCGGCGC CAACTCCATC TTCTACGGCG AGAAGCTGCT GACCACCGCC
AACCCCCAGG CGGACAAGGA CATGGCCCTG TTCAAGCGCC TCGGCATCAA GCCGGAAGAG
CGCGAGGAAC ATGCCGACGA GGTGCACCAG GCCGCCATCG AGCAGGCGCT GGTCGAGCAG
CGCGATTCCA AGCTGTTCTA CAACGCCGCC TCGGCCTGA
|
|---|
| Protein sequence | MSATAAITTR HDWTLAEVRA LFEQPFNDLL FQAQSVHRQH FDPNRVQVST LLSIKTGACP
EDCKYCPQSG HYNTGLDKEK LMEVEKVLQA AAEAKAIGST RFCMGAAWKH PSAKDMPYVL
KMVEGVKKLG LETCMTLGKL TQEQTQALAE AGLDYYNHNL DTSPEFYGNI ITTRTYSERL
QTLAYVREAG MKICSGGILG MGESVDDRAG LLIQLANLPE HPESVPINML VKVKGTPLAE
EKDVDPFDFI RTLAVARIMM PKSHVRLSAG REQMNEQMQA LAFMAGANSI FYGEKLLTTA
NPQADKDMAL FKRLGIKPEE REEHADEVHQ AAIEQALVEQ RDSKLFYNAA SA
|
|---|
| |