| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4080 |
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| Symbol | |
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| ID | 5106377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4469574 |
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| End bp | 4470893 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640505344 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001189559 |
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| Protein GI | 146309094 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTCAT CTATCGTCCG GGATGCCAGC GTGATTCGTC CGGCCAATCT GCGCCTCAGT
CACTTCTTTT CCTCGCTGCC CTTGCTGGTC GGTGGGCTGG TGGCTGCACG CTTGCCAGCA
CTCGGCGAAT TCTTCCTCTC CCTGTTCAAC GTGTTGCCGA CGCTTCTGCT GCTGCTGGGG
GGCGCCTTCT GTCTGGTCTA TGGCCGCCAG CGCGAGGTGT TCCTGCTGCT GGCGCTGTAT
GTCGGCTATT TCCTGCTGGA TATCCAGATC GATCACTTCC GTGACGGCGG TCAGGTGCGC
GACGATGCCG CGCTGGTCTT TCACCTGGTC TGCCTGCTGC TGCCGCTGCT CTACGCCTTG
TACGGCTGCT GGGAGGAACG CTCGCACTTG GCGCAGGACA TGCTGGCTCG CGCGCTGGTG
CTGCTGGCGA TCGGTGCGGT GGCCTTCGGC CTGGCGCGGC GTTATCCGCA GGGCATCGCC
GAGTGGCTGG CGCAGATTCA CTGGCCGGCG CTGCATGGCG CCTGGATGAA CCTGGCGCAG
CTGGCCTATC TGATGTTCCT GCTGGCCTTC GTCGCCTTGC TGGCGCAATA CCTGCGTCGT
CCCCGCCCGT TGCACGCGGC GCAATTGCTT GGCCTGTGCG GCCTGCTGTG GATGCTGCCG
CAGGTATTCA TCCTGGCCAA CGCGCTGCAG GTGATGATCA GCATGGTGAT GCTCATGCTG
GTGGCTTCGG TGGCTCATGA GGCCTACCAG ATGGCGTTCC GCGACGAGCT CACCGGGCTG
CCGGGTCGGC GCGCACTCAA CGAGCGCCTG CAGCGTCTGG GGCGTGACTA TGTGATCGCC
ATGGTCGACG TCGATCATTT CAAGAAATTC AACGACACCC ACGGTCACGA TGTCGGCGAT
CAGGTGCTGC GCCTGGTCGC CAGCCAGCTG CGCAAGGTCG GCGGTGGCGG CAAGGCCTAT
CGCTATGGCG GCGAGGAGTT CACCCTGCTG TTCCCCGGCA GGAGCCTGGA GCAGTGCCTG
CCGCATATGG AGACCGTGCG CCTGGCCATC GAGCAGTACC GCATGCAGTT GCGCGACAAG
CAGAACCGGC CGCGCGACGA TCGCGAGGGC AAGCCGCGCC GCGCCGGCAA GGGGGCCAGC
GAGGTGTCGG TGACCGTAAG CATGGGCGTG GCCGAGCGCA AGGCCGAACA GCGCAACCCT
CAGGAAGTGA TCAAGGAAGC GGACAAGGCG CTGTACAGCG CCAAGGCTGC CGGGCGCAAC
TGCATCCGCA GCGCCGGCCA GCGTCGGGGC GCCGTCAAGC TGGCCTCCGG GGGCGAATAG
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| Protein sequence | MPSSIVRDAS VIRPANLRLS HFFSSLPLLV GGLVAARLPA LGEFFLSLFN VLPTLLLLLG
GAFCLVYGRQ REVFLLLALY VGYFLLDIQI DHFRDGGQVR DDAALVFHLV CLLLPLLYAL
YGCWEERSHL AQDMLARALV LLAIGAVAFG LARRYPQGIA EWLAQIHWPA LHGAWMNLAQ
LAYLMFLLAF VALLAQYLRR PRPLHAAQLL GLCGLLWMLP QVFILANALQ VMISMVMLML
VASVAHEAYQ MAFRDELTGL PGRRALNERL QRLGRDYVIA MVDVDHFKKF NDTHGHDVGD
QVLRLVASQL RKVGGGGKAY RYGGEEFTLL FPGRSLEQCL PHMETVRLAI EQYRMQLRDK
QNRPRDDREG KPRRAGKGAS EVSVTVSMGV AERKAEQRNP QEVIKEADKA LYSAKAAGRN
CIRSAGQRRG AVKLASGGE
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