| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4043 |
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| Symbol | |
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| ID | 5106340 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4424017 |
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| End bp | 4425117 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640505307 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001189522 |
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| Protein GI | 146309057 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.902956 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGGATG GCAAACATAA CGATGACAGG GACGTAGGCA CGGGGCACTG CGAAGGGCTG
CGCGAGTCGG GCAAGCGCAC GCTGATGCGC ACCATCCTGC TCGCCACCGG CCTGACCCTG
GGCGGCTTTG CCGTGCTGCA GGCCCTGGCC GGCAACTACC CCTTCGCCAT CCTCGAAGTG
CTGTGCACCG CGCTGCTGCT GTTCGGCGCC TGGCGCATCG AGCGCGCGCG GCATCTGTAT
CTGTGGATCT ACCTGTACCT GATCCCGACC TTCTGTTTCA TCCTCTACAT CATCGTCATG
CCGGACGCGT CCTCGGCCGC CTTCGTCTGG CTGTACATGA TCCCGCTGCT GGCCTACCTG
CTGCTGGGCA AGCGCCGCGC CTTCCTGCTC ACCGCGCCCT TCATGCTCGC CGGCCTGCTG
CTGTACTTCT CCGGCAACCA CCTGACCCTG GACACCCACG GCTTGATCGA CCTGGGCAAT
GCCACGCTCT GCGGCGTGCT GATCCTGGTG TTCGTGCATA TCTACGATGG CCTGCGCATG
CAGGCCCATG AGGAGCTGGA GCGACTGGCG CAGACCGACT CGCTGACCGG CGTGGCCAGC
CGCGGCAGCT TCCAGCATGC CTTGCAGCGC AGCATTCAGG AGGCCGAGCG TAGCAGTGGG
CATCTGGTGC TGGTGCTGCT CGACGTCGAC CACTTCAAGG AGGTCAACGA CCGATGGGGA
CACGAGGCGG GCGACATGGC GCTGCAGCAC ATCTGCCAGA TGCTCCAGCA GCGCCTGCGC
GTCACCGATT TTCTCGGGCG TCTGGGCGGC GAAGAGTTCG GTCTGCTGCT GCGTCATACC
GACAGCACCG GCGCCGGCCC GCTGGTGGAA ACGCTGCGCC GGCAGCTCAC CGAACGCCCG
CTGGAATACC ACGGCCAGCC GATCGCGCTT TCCGCCACCT TCGGTCTGGC CGCCTGGCCC
GAGGATGGCC GCAGCGCCGC CGAGCTCTAC CGTAGCGCCG ATCGCCGCCT GTACAGAGGC
AAGCAGCGCG GGCGCAATCA ACTGGTCAGC AGCGACCTGC CGGCCGAGCT GCTGCTGGAC
AAGTTCGACG TACGCTTCTG A
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| Protein sequence | MVDGKHNDDR DVGTGHCEGL RESGKRTLMR TILLATGLTL GGFAVLQALA GNYPFAILEV
LCTALLLFGA WRIERARHLY LWIYLYLIPT FCFILYIIVM PDASSAAFVW LYMIPLLAYL
LLGKRRAFLL TAPFMLAGLL LYFSGNHLTL DTHGLIDLGN ATLCGVLILV FVHIYDGLRM
QAHEELERLA QTDSLTGVAS RGSFQHALQR SIQEAERSSG HLVLVLLDVD HFKEVNDRWG
HEAGDMALQH ICQMLQQRLR VTDFLGRLGG EEFGLLLRHT DSTGAGPLVE TLRRQLTERP
LEYHGQPIAL SATFGLAAWP EDGRSAAELY RSADRRLYRG KQRGRNQLVS SDLPAELLLD
KFDVRF
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