| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3983 |
|---|
| Symbol | |
|---|
| ID | 5110206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 4361321 |
|---|
| End bp | 4362043 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640505246 |
|---|
| Product | putative phage repressor |
|---|
| Protein accession | YP_001189462 |
|---|
| Protein GI | 146308997 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2932] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00000900431 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.128218 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACTT TAGGTCAACG ATTAAAGCGC CTGCGCAAAG CAAAAGGCAT GAGCCAGCAG
GCTCTAGCCG AAGAATGCGG CTGGGCGTCG CAATCTCGCA TTGGCAACTA CGAGGCCGAC
CTGCGAGCCC CGTCATTAAG CGATCTCTTG CTAATCGCAC CCGCACTCGG AGTTAGCCTC
GCCGAGCTCG CTGGCAGCGA TGAATGGACC GGCGCATATG GCGTTCAGGT TCAGGTCAAG
AACCACCAGG TCAGAGAGAG CGTCGGCGCT GAGACAATAG AGGCAGGAAC CGCCAAGGAG
GGGGCAGTAC CGGTGGTGGG TAACGCGAAG CTCGGAACAG ACGGCTATTT CGAAGCCGTA
GATTTCCCCG TAGGTCACGG CGACGGCTAC TTGCTGATTC ACAGCGACGA CCCGAACGCC
TATGGGCTCA AGGTGCTGGG CGACAGCATG CATCCTAGGA TCAAGAACGG CGAATACGTC
CTGATCGAGC CCAACAAAGT GTTCACCTCG GGCGACGAAG TGATGGTCAA GACGAAAGAC
GGCCAGGCGA TGATCAAAGA GTTCATCTAC CTGCGCGACG GCATGTACCG GTTCGACAGC
GTCAACCAGA GCCACCAACC CATCCACCTG CCAGAGGACG CGATCGACAA GATCCACTTG
GTCGGCGGCA TCCTCAAGTC ATCTCGCTTC ACGCACGACT ACCACACGGC CAGAAAGAAA
TAA
|
|---|
| Protein sequence | METLGQRLKR LRKAKGMSQQ ALAEECGWAS QSRIGNYEAD LRAPSLSDLL LIAPALGVSL
AELAGSDEWT GAYGVQVQVK NHQVRESVGA ETIEAGTAKE GAVPVVGNAK LGTDGYFEAV
DFPVGHGDGY LLIHSDDPNA YGLKVLGDSM HPRIKNGEYV LIEPNKVFTS GDEVMVKTKD
GQAMIKEFIY LRDGMYRFDS VNQSHQPIHL PEDAIDKIHL VGGILKSSRF THDYHTARKK
|
|---|
| |