| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3757 |
|---|
| Symbol | |
|---|
| ID | 5105752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 4141716 |
|---|
| End bp | 4142378 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640505012 |
|---|
| Product | CRISPR-associated Cas5e family protein |
|---|
| Protein accession | YP_001189237 |
|---|
| Protein GI | 146308772 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01868] CRISPR system CASCADE complex protein CasD/Cas5e
[TIGR02593] CRISPR-associated protein Cas5, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.364301 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCC TGTTGCTGCG CTTGCAGGGA CCGATGCAAT CCTGGGGCAC TACCAGCCGT
TTCGATGAGC GCGACACCCA GCTGGAGCCT TCCAAGTCGG GTGTGCTCGG GCTGGTCTGT
GCGGCTCTGG GGCGTGATCG GCATGAGCCC GTGGAGGATC TGGCTGCCCT GCGCATGGGT
GTACGTGTCG ATCACGAAGG TGCTCCGATG CGCGACTACC AGACCGCTAC CGGCGTGTTG
ATCGCCACCG GTAAGTCCGA TTTGCGCCGC ACCGTGGTCA GCCCGCGCTA CTACTTGGCG
GACGCGGCCT TTCTGGTCGG CCTGGAGGGC ACGGATGACG CCCTGCTGGC GCGTATACAC
GCCGCCTTGC GCGCCCCGCA CTGGCCGCTG GCGCTGGGGC GCAAGAGCTT TGCGCCGGGC
ATGCCGGTCT GGTTGCCCGA CGGTCTTTCA TCCTTGTCGT TGGAAGAGGC GCTGGCTCAG
TACCCTCGGC TCTCCGGCGC GCGCCGGGCT GATTCACAGC CGACCCTGCG CTGTCTGCTG
GAGGATGCGC AGGAAGGCGC CATTCGCCTC GATCAGCCCG TCGCACCTTT CGCCGAACGC
CGCTTCGGCC CACGTTTCGT GAAATCGGAG GTGCTGCATG TACCTGACCA GACTGACGCT
TGA
|
|---|
| Protein sequence | MATLLLRLQG PMQSWGTTSR FDERDTQLEP SKSGVLGLVC AALGRDRHEP VEDLAALRMG
VRVDHEGAPM RDYQTATGVL IATGKSDLRR TVVSPRYYLA DAAFLVGLEG TDDALLARIH
AALRAPHWPL ALGRKSFAPG MPVWLPDGLS SLSLEEALAQ YPRLSGARRA DSQPTLRCLL
EDAQEGAIRL DQPVAPFAER RFGPRFVKSE VLHVPDQTDA
|
|---|
| |