| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3547 |
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| Symbol | |
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| ID | 5106094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3912509 |
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| End bp | 3913879 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640504800 |
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| Product | TRAP-type uncharacterized transport system periplasmic component-like protein |
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| Protein accession | YP_001189027 |
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| Protein GI | 146308562 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0810507 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCGCG TACTGCACGA CCTGAAGATC ATGATCCTGG CCAACCTGTG GATAGTTCCG
GTGGTGGCCG CCCTGGTCTG GGCACTGTTC CAGTTTGTCG CTCCGCCACC GCCGATGAGC
GCCAGCATGG CCACCGGCAC CCAGGGCGGC GCCTACCGGA TGTTTGCCGA GCGCCTGAAG
GAGGAGCTGG CCAAGGAAGG CTTCGAGCTG AACCTGGTGC CGACCTCCGG CTCGCGCGAC
AACCTGCAGC GCCTGCTGGC AGACGACCCC GATGTGCAGA TCGCCCTGGT GCAGAGCGGG
CTGGAACGTC AGCTCGCGCC TGACCAGCAG GCGCGCCTGC AGAGCCTCGG GGCGATCTAT
CAGGAACCGC TGTGGCTGTT CTACCGGCGC GAGGTCAGCC TCGACCGCAT CGCCGATCTG
CTGCCGCTGC GCCTCGGCCT GGGCGGCGAA GGCAGCGGAA CCCGCGCCGC CAGCGAGGCC
ATCCTCGAAG CCAACGGCAT CGCCGCCGAG CAGTATCCAC CCGCCTGGCA GGACGCCGGC
GGCGGCAAGG CGGCCCGCGC CCTGCTGGCC GGCGAGCTGG ACGCCGCCTT CTTCGTCGGC
CCGGCGGAGA ATGCCATGGT GCAGCAACTG GCCGCCGCGC CGGAGATCGC CCTGGCGCAT
TTTCGCCGCG CCGCCGCCTA CGAGGCGCGC CTGCCCTTCT TCAACCAGGT GAAGGTGGGC
GAAGGCCTGC TCGACCTGGC CAGCAACGCG CCGGATCGCG ACATCGTCAC CCTGGCGCCG
GTGGCCACGC TGGTGGTCAA CGACCAGTTC AACCCTGGCC TGGTACCGCT GTTTCTCGCC
GCCAGCCGCG AGGTGATGCG CAGCGGCACC CTGCTCGATG CCGCCGGAGC CTTTCCCAGC
GCCGAACCGC GCACCTTCGA CCTGCACCGC GACGCCGAGC ACTTCTACGA CAAGGGCCTG
CCGATCCTGC AGCGCTACCT GCCGTTTCGC ATCGCCTCGC TGGCCGACCG CTACATCATC
CTGCTGATCC CGCTGATCGT GGTGATGATC CCGCTGCTCA AGGCGGTGGG GCCGATCTAC
CAGTGGCGCA TCCGTGCGCG CATCTACCGC TGGTACAAGT ACCTGCGCGA CATCGACCGC
AAGCTGCACG CCGGCTCGCT GCCGGCCGAA CTGGAAAGCG AGATCCAGCG CCTGGAAAGG
CTCGAGGACG AACTGGCCGC GGTGGAGGTG CCGCTGTCGT ACTCCAACGA GCTGTACGAG
CTGCACATGC ACCTGCGCTA CGTGATCGAG CGCCTGCGCG CGCTGCAAAA GCGCCGCGGC
GAAGGCCCCG AGCAGGCGCC CTCGGTGGTG CCGAGCCCGG AGCGCAGCTA G
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| Protein sequence | MRRVLHDLKI MILANLWIVP VVAALVWALF QFVAPPPPMS ASMATGTQGG AYRMFAERLK
EELAKEGFEL NLVPTSGSRD NLQRLLADDP DVQIALVQSG LERQLAPDQQ ARLQSLGAIY
QEPLWLFYRR EVSLDRIADL LPLRLGLGGE GSGTRAASEA ILEANGIAAE QYPPAWQDAG
GGKAARALLA GELDAAFFVG PAENAMVQQL AAAPEIALAH FRRAAAYEAR LPFFNQVKVG
EGLLDLASNA PDRDIVTLAP VATLVVNDQF NPGLVPLFLA ASREVMRSGT LLDAAGAFPS
AEPRTFDLHR DAEHFYDKGL PILQRYLPFR IASLADRYII LLIPLIVVMI PLLKAVGPIY
QWRIRARIYR WYKYLRDIDR KLHAGSLPAE LESEIQRLER LEDELAAVEV PLSYSNELYE
LHMHLRYVIE RLRALQKRRG EGPEQAPSVV PSPERS
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