| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3540 |
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| Symbol | |
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| ID | 5106008 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3904101 |
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| End bp | 3905198 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640504793 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001189020 |
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| Protein GI | 146308555 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.123648 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGTTAT TCAATGCATT GGCGCGATCG CTGGATCCGT TGCACGGGGT GCAGGCTGCC
ACTCGGCAGG CGTTCGACCA CTGGTATCGT CAGGCGAAGA TTCCGCAGAT TCGTTACGTC
GCCTTTCTGA CCATGGCGTT GTATCTGATC TACGCCGCCA TCGAGCAGAA CGTGACGAGC
GAGCAGGTGC TGGCCCGATT CATCGTTCAT GGCCTGATGG TGCCCGGGGC GCTGCTGGCG
GTGGGGGTGC TGAGCTTTCA GCCCAGCCGC CAGCGCACGA TGTTCACGAT TCTCACGGTG
GCGCCCGTTT GCACGGCGGC GGCCAATCTC CATTTCAATT TCGGCACGCC GCTGTTCGTC
CATTTCGCGC CGGAAATCTA CCTCAACCTG ATGTGGACCT TCGCCGTCTC CGGCCTCACC
CTGCGTCAGG CCCTGGCTAC GGCCTCGGCA TCGGTGCTGG TGATTCTCGT CGTCACCCTC
GACCATTCGC TGGAGCCGGG CATGCAGCGG CTTCACCTGA TCTGGATTCT GGCGTCGTTT
TCCTTCGGGT TGCTCAGTGC GTTCCTGCTG GAGCGAGCGC ATAAGCGCAT GTTCCTGCAT
CAGGACCGGC TGGCCCTGAG CGCCAGCCTG GACGGGCTGA CGGGGCTGTG GAACCGCTCG
CGCATGGAGC GCTTCCTGGT CGAGGAAATC GCCAGGGCCA ACCGTTACGG CACCCCGTTT
TCCGTGGTGC TGATCGATAT CGACCATTTC AAGAGCGTCA ACGATACCCA CGGCCATGCG
GTGGGTGACA GCGTGCTGCG CCAGTTCGCC ACCTTGCTGC GCGACAGCGT GCGGGTATTG
GACAAGGTGG GGCGGCTGGG CGGTGAGGAG TTTCTGATCG TCCTGCCGGA GAACGATGCC
GCGCAGGCGA AGCAGGCCGT ACAGGCGCTG CAGCAGCGCA TCAACGGGTT CGCTTTCGAC
AGGGTGCAGC GCAAGACGGC CAGCTTCGGC ATTGCCGAGT ATCGCCCGGG CGAGAGCCTT
GATAGCCTGC TGGAGCGTGC CGATCAGGCG ATGTATCGCG CCAAGGCCAG TGGCCGTGAT
CGCATCGAGG CGCTCTGA
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| Protein sequence | MPLFNALARS LDPLHGVQAA TRQAFDHWYR QAKIPQIRYV AFLTMALYLI YAAIEQNVTS
EQVLARFIVH GLMVPGALLA VGVLSFQPSR QRTMFTILTV APVCTAAANL HFNFGTPLFV
HFAPEIYLNL MWTFAVSGLT LRQALATASA SVLVILVVTL DHSLEPGMQR LHLIWILASF
SFGLLSAFLL ERAHKRMFLH QDRLALSASL DGLTGLWNRS RMERFLVEEI ARANRYGTPF
SVVLIDIDHF KSVNDTHGHA VGDSVLRQFA TLLRDSVRVL DKVGRLGGEE FLIVLPENDA
AQAKQAVQAL QQRINGFAFD RVQRKTASFG IAEYRPGESL DSLLERADQA MYRAKASGRD
RIEAL
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