| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3479 |
|---|
| Symbol | |
|---|
| ID | 5105948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3839625 |
|---|
| End bp | 3840338 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640504732 |
|---|
| Product | isochorismatase hydrolase |
|---|
| Protein accession | YP_001188960 |
|---|
| Protein GI | 146308495 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.522035 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGAAC AACAACAAGA GTTGCTTATG AACACAGACA GAGCCTTACT CGTCATCGAC
ATGCAGCAGG AAGACGGTTT TCCCCTGCAT GGCTTCGACC GGGTTATCCA CAACAACATC
CGCCTGCTGG ATGCAGCCCG GCAGACGGGC ATCCCCATTA TCTACACCCG GCACGTCAAC
GCGACGGACG GCAGCGATCT GCCTCCGGGC GAGCCGGTCG ACGCCGCCGG TCGCCCGCGG
AGTTATCGTG CCGGCACCCA CCAGGTGGAA ATCGTCGACT GCCTGGCGCC CAGAGCCGGC
GAGCGAGTGA TCGACAAGCC ACGTTACAGT GCATTCCACC GCACCGACCT CGCTCAGCAG
CTAGCGGGAA TGGGAACCTG CCGGCTGGTC ATCAGCGGCG TGCTCACCGA CGCCTGCGTA
CTGGCCACAG TGCTGGACGC CTTCGCCCTG GGCTACGCCG TCGACCTGAT CGCCGATGCC
TGCACCAGCA CGACTGAATC CGCCCACAAC GCGGCGCTGT TGATCATGGC CAACTGGATT
TACGCCATCG AACTCTTCGC CACCGAGCAA TTCCTGCAAG TCCTTGAGGG AAGAGCCTGC
CAGTCCTGCC GCCCAAGCGA GCCCGATCAG TTCGCACACC ATCCCGAGCA GTTCGTCGCC
ACCATTGCCC GCCTTCAATC CGCCCTGGGT CAACCCGGGC GTAAACAGGA GTGA
|
|---|
| Protein sequence | MAEQQQELLM NTDRALLVID MQQEDGFPLH GFDRVIHNNI RLLDAARQTG IPIIYTRHVN
ATDGSDLPPG EPVDAAGRPR SYRAGTHQVE IVDCLAPRAG ERVIDKPRYS AFHRTDLAQQ
LAGMGTCRLV ISGVLTDACV LATVLDAFAL GYAVDLIADA CTSTTESAHN AALLIMANWI
YAIELFATEQ FLQVLEGRAC QSCRPSEPDQ FAHHPEQFVA TIARLQSALG QPGRKQE
|
|---|
| |