| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3461 |
|---|
| Symbol | |
|---|
| ID | 5105931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3819036 |
|---|
| End bp | 3820022 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640504715 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001188943 |
|---|
| Protein GI | 146308478 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.948004 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGTTCA ACAACGCGAC TCGCAACCTG GCCAGCGAAC TTAACCAATG GCTCGACAGC
CTGCTCGCCC AGCGACCGCA GGACACCAGC CGCCCGCACT TGCAGCGCCA GCCGCAGCTG
CTCGGCAGCC TGCAGCGCCT GCAACACGAC TGGACGGAGC TGCAGCGCAT TCGCCAGCAC
GCCGAGCAAC TACCGCCGGC GCCCTGCAGT ACCGAGCAAT ACGCCGCCCT GCAACAGCGC
CTGGCGCAGG CCGAACAGCA ATGCGCCCTG CTCGAGGACG AGCTGCAGGC CAGCCGCCAG
CAGTTCGAAA CCCTCACCGC CGAGCGTGCG CACTGGAACG AGGAACGTCA GGTCTGGGAC
CTGACCAAAC GCACCCTGAC CGAAGGCTGC TGGGCGATGA ACGTGGTGAA CGGCGACCCC
GACCACCCGC AGAACCTGAT CCGCTGGTCT GCGCAGTTCC GCGAACTGAT CGGCTACAGC
CAGGCGGAAT TTCCCGATGG CTGGGACAGC TACTTCAAGG TGGTCAACCC GGACGACCTC
AAACAGGTCA TGCAGGCCTT CAGCGCCTCG ATGCTGGACA AGAGCGACGA TGGTTTCTAC
GCCGTGGAGT ACCGCATGCG CCACAAGACC CGTGGCGAGC TGTGGTTCCG CGAACGCGGC
CGCTGCCTGC GCGATGCGCA AGGCAAGCTG CTCTATGTCA CCGGTGCGGT GCGCGAAATC
AGCGACGAGA AAACCGCCGC CAGCATGCAC GAACGCGAGC AGGCCAACAT CCACAGCACC
TACGGGCAGA TCGCCCAGGT CGCCGGGGTG ATCAAGGGCA TTGCCGAACA GACCAACCTG
CTCGCCCTCA ACGCGGCCAT CGAAGCGGCC CGCGCCGGCG AGCAGGGCCG CGGCTTCGCC
GTGGTCGCCG ACGAGGTGCG CAATCTGGCC AGGCGCACCC AGGACTCGGT GCAACAGATC
CAGGCCATGT TGCAGCAGAA GCGCTGA
|
|---|
| Protein sequence | MWFNNATRNL ASELNQWLDS LLAQRPQDTS RPHLQRQPQL LGSLQRLQHD WTELQRIRQH
AEQLPPAPCS TEQYAALQQR LAQAEQQCAL LEDELQASRQ QFETLTAERA HWNEERQVWD
LTKRTLTEGC WAMNVVNGDP DHPQNLIRWS AQFRELIGYS QAEFPDGWDS YFKVVNPDDL
KQVMQAFSAS MLDKSDDGFY AVEYRMRHKT RGELWFRERG RCLRDAQGKL LYVTGAVREI
SDEKTAASMH EREQANIHST YGQIAQVAGV IKGIAEQTNL LALNAAIEAA RAGEQGRGFA
VVADEVRNLA RRTQDSVQQI QAMLQQKR
|
|---|
| |