| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3379 |
|---|
| Symbol | |
|---|
| ID | 5105851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 3730163 |
|---|
| End bp | 3730867 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640504635 |
|---|
| Product | allophanate hydrolase subunit 1 |
|---|
| Protein accession | YP_001188863 |
|---|
| Protein GI | 146308398 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2049] Allophanate hydrolase subunit 1 |
|---|
| TIGRFAM ID | [TIGR00370] conserved hypothetical protein TIGR00370 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.332563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.85037 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCGC GCATCGAGGT GGTGGGCATC GACAGCCTGA TCCTGCGCCT GTTCGAGCAG
ATCGAGGAAA GCAACATGCC CTGGCTGCTG GCAGCCAGCG AGCGTCTGCG GACCGTCTTC
GGCCCGGCGC TGGTCGATCT GGTGCCGTCC TACACCACCC TGCTGCTGCA CTATGACCTG
CAGCAGCTGG ACGACCGCCA GGCCCGCGCG CTGATCGCCC AGGCCTTCGA CAACCTTTCT
CCGCAGACCG GCAGCAGCGG CCGCGAGCTG CAAATACCGG TGTGGTATCA CCCCAGCGTC
GGTCCCGAGC TGGCGCTGCT CGGCCAGCGC AGCGGGCTGG GCAGCGACGG CGTGATCGAG
CGCCACAGCG CACGCAGCTA TCAGGTCTTC GCCCTCGGCT TCGCGCCCGG CTTCGCCTTC
ATGGGCCTGG TCGACGAGTG CCTGGCCAGC CCGCGCCTGA GCACGCCTCG GCAACGCGTC
GCCGCCGGCA GCCTCGGCAT CGCCGACCGC CAGACCGCCA TCTACCCGCT GGTCTCCCCC
GGCGGCTGGA ACCTCATCGG ACGCAGCCCC AGCCAATTCT TCGACCGCCA GCTGGATGGC
TACAGCCTGC TGCAGCCAGG CGACCGGGTG CGCTTCGTGC CCGTCGAGCG CGACGAGTTC
GTGCGTCTGG GTGGCGACGA CACGCCCTTC GAGGTGACGC CATGA
|
|---|
| Protein sequence | MTPRIEVVGI DSLILRLFEQ IEESNMPWLL AASERLRTVF GPALVDLVPS YTTLLLHYDL
QQLDDRQARA LIAQAFDNLS PQTGSSGREL QIPVWYHPSV GPELALLGQR SGLGSDGVIE
RHSARSYQVF ALGFAPGFAF MGLVDECLAS PRLSTPRQRV AAGSLGIADR QTAIYPLVSP
GGWNLIGRSP SQFFDRQLDG YSLLQPGDRV RFVPVERDEF VRLGGDDTPF EVTP
|
|---|
| |