| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3252 |
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| Symbol | |
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| ID | 5106759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 3602431 |
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| End bp | 3603390 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640504509 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001188737 |
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| Protein GI | 146308272 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCTGC TGCTGATACT GACCTACACC GCCATCTGCG TTGCCATCTT CAAGATATTC
AGGATTCCGT TGAACAAGTG GACGGTGCCC ACTGCAGTAC TCGGCGGTAT CGTGCTGATC
GGCACGCTGA TCTTCCTGAT GAACTACAAC CACCCCTATT CCGAGGTCAC GCGCAGCTAC
TTCGCCAGCA CCCCGATAGT GCCGGCCGTG AGTGGCCAGG TGATCGAGGT ACCGGTACTC
GGTAACCACA TGCTGGAAAA GGGCGACGTG ATCTTTCGCA TCGACCCCAC CCCCTTCGAA
AATCGCGTGC GGTCTATCAA GGCCCAGTTG GTGTCGGCCA GGGGTGACCA GTTCCGCGCC
AGTGAACTGG TCAAGCGCAA TCTGGGCAAC CGGCGCGACC TGGACATCAC CACCGCTCGC
GTGGACGACC TGCAGGCGCA GCTCAATATC GCCCAGTTCG AGTTGGACAA CACGGTGGTG
CGGGCACCAT CGCGCGGCTA TGTGACGCAG GTGGTGCTGC GCCCGGGTAT CTACGCAACG
AAGATGCCGC TGCGTCCTTC GGCGATCTTC GTGCCCCATG AGGACTACGC TTACGTTGCC
TGGATGCGCC AGAACAGCCA GCTGCGTCTG ACACCGGGCG ACTCGGCTGA GATCGCTCTG
GACGGCTTAC CCGGCAAGGT TTTCCAGGCA CGCGTCAAGC AGGTGCAACC CGTGATCGCC
GAGGGGCAGG TGCAGCCGGG CGGCCATCTG ATCGGCGTCA CCGGCGCCAT GCCGGCCGGA
CGCGTGCCGG TGGTGCTGGA GATTACCGAC CCGGCCTTCG AACCCTTCAA GGACCTGATA
CCGGGCGGTG CCTATGGCCA AGCTGCACTC TACTCCGAGC ACTTTCCCCA CGTGGCGATT
CTGCGCAAGG TGCTCCTGCG GATGGCTGCC TGGATGAATT ACATATTCCC CTTCCACTGA
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| Protein sequence | MDLLLILTYT AICVAIFKIF RIPLNKWTVP TAVLGGIVLI GTLIFLMNYN HPYSEVTRSY
FASTPIVPAV SGQVIEVPVL GNHMLEKGDV IFRIDPTPFE NRVRSIKAQL VSARGDQFRA
SELVKRNLGN RRDLDITTAR VDDLQAQLNI AQFELDNTVV RAPSRGYVTQ VVLRPGIYAT
KMPLRPSAIF VPHEDYAYVA WMRQNSQLRL TPGDSAEIAL DGLPGKVFQA RVKQVQPVIA
EGQVQPGGHL IGVTGAMPAG RVPVVLEITD PAFEPFKDLI PGGAYGQAAL YSEHFPHVAI
LRKVLLRMAA WMNYIFPFH
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