| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_3192 |
|---|
| Symbol | |
|---|
| ID | 5106521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3528073 |
|---|
| End bp | 3529401 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640504449 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001188677 |
|---|
| Protein GI | 146308212 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.010233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGCCCA ATCAGCAAGC CTCGAATGCC TGGCGCATTC TGTTCCTGCT TTTCCTGGCC
AACCTGTTCA ACTTCTTCGA CCGCACCATC CCCGCCATCA TCATCGAGCC GATCCGTCTG
GAATGGAGCC TGAGCGACCT GCAGCTGGGT CTGATCGGCA CCGCCTTCAC CATCGTCTAC
GCCCTGGCCG GTGTGCCGCT GGGGCGCATG GCCGATACCG GCGCGCGGCG CAAGATCATG
GGCTGGGGCC TGGCAGCCTG GAGCGGGCTG ACGGCGCTCA ACGGCATGGC GTGGAACTTC
TGGAGCTTTC TGCTGATTCG CATGGGGGTG GGCATCGGTG AGGCCAGCTA CGCACCGGCG
GCCAATTCGC TGATCGGCGA CCTGTTTCCG GCGCACAAGC GCGCGCGAGC CATGGGCATC
TTCATGCTCG GTCTGCCCCT GGGGCTGCTG CTGGCCTTCT TCACCATCGG CGCCATGGTC
CAGGCCTTCG ACAGCTGGCG CGCGCCCTTT CTGATCGCGG CGGTGCCGGG GCTGATCCTG
GCGCTGTTCC TGTTCTTCAT CCGCGAGCCG GCGCGCGGCG CGGCGGAGAG CATGCGGGTA
AACAGCGCGC CGGTGGACAA GCCGCTGCGC AAGGTGCTGG CGATCCGCAC CTTCTGGTGG
CTGGTACTGG CGGGGCTGGC GTTCAACTTC GCCTCCTATG CCTGCAACTC GTTCATGGTG
CCGATGCTGC AGCGCTACTT CGGCCTGGGC CTGCAGAACG CGGCGATGGC CACCGGCGTG
ATCGTCGGAC TCACCGGCCT GGTGGGTCTG ACCCTGGGCG GCTGGATCGC CGACAAGGTG
CACCAGCGCT GGGGCAATGG CCGGCTGCTG TTCGCCGCAT TCAGCATGCT GGTGGCCTGT
CTGTGCACCG GCTGGGCGCT GAGCGCCGGG CGCATCGACA CGGCGCTGTT CGTCGGCGTG
TTCAGCCTGG GCTGGCTGTT CTCCTACAAC TTCTACACCT GCGTCTACAC GGCGATTCAG
GACGTGGTCG AGCCGCGCCT GCGCGCCACC GCCATGGCCT TGTTCTTCGC CGGTCTGTAC
CTGCTCGGCG GCGGCCTTGG TCCGCTGGCG GTGGGCTGGC TGTCGGATCA CTACGCACAG
GCGGCGATGC ATGCGGCCGG CGCCAGCGAG ATGAGCGAAG CGTTCAAGGC CGTTGGCCTG
CACGACGCCA TGCTGCTGAT TCCGGTGGCC CTGCTGCTCA CGCTGCTGGC CCTGCTGCAG
GCGGCGCGCT GCTTTCAGGA GGATGCGCTG CGTATGCGCG AAGGATTGGC GCAGGCCGTG
CCGGCATAA
|
|---|
| Protein sequence | MQPNQQASNA WRILFLLFLA NLFNFFDRTI PAIIIEPIRL EWSLSDLQLG LIGTAFTIVY
ALAGVPLGRM ADTGARRKIM GWGLAAWSGL TALNGMAWNF WSFLLIRMGV GIGEASYAPA
ANSLIGDLFP AHKRARAMGI FMLGLPLGLL LAFFTIGAMV QAFDSWRAPF LIAAVPGLIL
ALFLFFIREP ARGAAESMRV NSAPVDKPLR KVLAIRTFWW LVLAGLAFNF ASYACNSFMV
PMLQRYFGLG LQNAAMATGV IVGLTGLVGL TLGGWIADKV HQRWGNGRLL FAAFSMLVAC
LCTGWALSAG RIDTALFVGV FSLGWLFSYN FYTCVYTAIQ DVVEPRLRAT AMALFFAGLY
LLGGGLGPLA VGWLSDHYAQ AAMHAAGASE MSEAFKAVGL HDAMLLIPVA LLLTLLALLQ
AARCFQEDAL RMREGLAQAV PA
|
|---|
| |