| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2960 |
|---|
| Symbol | |
|---|
| ID | 5107678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 3285882 |
|---|
| End bp | 3286553 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640504218 |
|---|
| Product | 3-methyladenine DNA glycosylase-like protein |
|---|
| Protein accession | YP_001188447 |
|---|
| Protein GI | 146307982 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2818] 3-methyladenine DNA glycosylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.208736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.0259556 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGATT ACAAGTGGCT GCACGAGTTC TGCCTCAACC GCTTCGGCTC GGCCAAGGCT
CTGGAGGCCA TGCTGCCGCA GCCGCGCAGC GATGCCGAAC TGCGCGCGCT CTCCGATGAC
CGCTACCTGT CGCTGATGAG CCTGCGCATC TTTCGCGCCG GCCTCAAGCA CAGCCTGGTG
GACGCCAAGT GGCCGGCGTT CGAGGAGGTG TTCTTCGGCT TCGACCCGGA GAAGGTGGTG
CTGATGGGCG CCGAGCGCCT GGAGAACCTG ATGCAGGATG CGCGGCTGAT CCGCCACCTG
GGCAAGCTCA AGAGCGTGCC GCGCAATGCC CAGTTCATCC TCGACGTGCG CCGCGAGAGG
GGCAGCTTTG GCGCACTGAT CGCCGACTGG CCGGCCAGCG ACATCGTCGG TCTGTGGAAG
TACCTGGCCA AGCACGGCAA CCAGCTGGGC GGGCTGTCGG CGCCGCGTTT TCTGCGCATG
GTGGGCAAGG ATACCTTCGT TCCCACCGAC GACATGGTCG CCGCGCTCAA GGCGCAGGAC
GTCATCGACA AGGCGCCCAC CAGTCAGAAG GACCTGGCCG CGGTGCAGGC GGCTTTCAAT
CAGTGGCAGG CCGAGAGCGG CCGGCCGCTG TGCCAGCTAT CGGTGATGCT GGCGCACACG
GTCAATCATT GA
|
|---|
| Protein sequence | MRDYKWLHEF CLNRFGSAKA LEAMLPQPRS DAELRALSDD RYLSLMSLRI FRAGLKHSLV
DAKWPAFEEV FFGFDPEKVV LMGAERLENL MQDARLIRHL GKLKSVPRNA QFILDVRRER
GSFGALIADW PASDIVGLWK YLAKHGNQLG GLSAPRFLRM VGKDTFVPTD DMVAALKAQD
VIDKAPTSQK DLAAVQAAFN QWQAESGRPL CQLSVMLAHT VNH
|
|---|
| |