| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2776 |
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| Symbol | |
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| ID | 5107572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 3055272 |
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| End bp | 3056735 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640504026 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001188263 |
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| Protein GI | 146307798 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.425171 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCCA AGGCCCTGGC CGCTCCGCTG CTGCTCGCCC TGGCCCTGAG CGCCTGCTCC
AGCGCACCGC AGCACCCGGC GCCGCAACTG CCGGATACCT GGTTCAGCGC CGCCGGCGCC
CACCCGGCCG ATGCCGAGTC GCTGGCCAGC TGGTGGCGCC AGTTCGACGA CCCGCAGCTC
ACCGCGCTGG TCCACCGCGC CATGCAGCAG AACCATGATG TACGCCTGGC CATGGCGCGG
GTCGACAGCG CCCGCGCGCA GCTGCGCCAG TCGCGCGCCG GCCTGCTGCC GAGCTTCGAC
CTGCCGGGCT CGGCCAGCCG CCAGTGGATC GAGAACGACC AGGACGCCGA ACCCGGCAGC
CCGCTGGCCG AGTTCATCCC GGATGACGAC CCGATCGCCT TCGACAGCTG GGAACTGGCG
CTGCAGGCGA CCTGGGAGCT GGACCTGTTC GGCGCCACCC GCGCCCGGCG CGACAGTGCC
GCCCAGCAAC TGCGCTCGGC CGAGGCGCAG ACGGTGGCCG CGCGCCTGGC CGTGGCCGCC
AACACCGCGC AGGGCTACCT GCAACTGCGC GCGCTGCAGG GTCAGCGCGC GCTGCTGGTG
GAAGGCATCG AGGTGGCCCG CGAACTGGAG CGCATCGCCG GGCTGCTGTT TCACGCCGGC
GAGGTGACCC GGCTGGACGT GGAGGCCACA TCCGCCGAAC GCGCATCGCT GGAAGCCGAT
CTGGACGAGC TGGATATCCA CCTGGCCGAA GCGCAGCTGG CGCTGGATAC CCTGCTCGCC
GAGCCGCCGG GCAGTAGCGC CGTCCACCTC GCCGCCAGTA CGGCGGTGCC GTTGGCCGAA
TCGCGAATCG CCGCCGGTCA GCCCATCGAC CTGTTGCGCC GTCGCCCGGA CCTGATCGCC
GAAGCGGCGC GGCTGGATGC CGCCGAACTG CAGGCACTGG CCGCCCGCCG CGACCTGTTC
CCGAAACTGG CGGTGCAGGC CGCCGTGGGT CGCTCGGGCT TCGCCCTGGG CGACGCCATT
TCCAGCGCTT CGAACTTCGC CCGGGTCGGC GCCACCTTCG GTCTGCCGCT GCTGGACTAT
GCAAACCGCG GTGCCGCCAT CGAACTGGCC GATGCCGAGG GCGAGGGCGC CTACATCGCC
TTCGAGCAGG CTCTGACCCG GGCGCTGGAG GAGGTCGAAC GCGGCCTGAC ACGCATTGCC
GGCCAACAGC GTCGGCACGC CGCCCTCAGC CGCACCCGCG AGCACCGCGA GCACGCGCAC
CGCCTGGCGC AGCGCAGCTA CGAGCTGGGC GAGGCGAACC TGAGCGAGGT GCTGGACGCT
CAGCGCGGCG CACTGCAGGC GCGCCAGCGG GCACTGGAGG GTCGCGCCGC ACTGGCGACC
GCGCAGGTGG CGTTGTACGT GGCGCTGGGC GGTGGCTGGC AGGCGGGAGG CGCGCAGGCT
GCGGATACTG GCGCCGGGGA GTGA
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| Protein sequence | MTAKALAAPL LLALALSACS SAPQHPAPQL PDTWFSAAGA HPADAESLAS WWRQFDDPQL
TALVHRAMQQ NHDVRLAMAR VDSARAQLRQ SRAGLLPSFD LPGSASRQWI ENDQDAEPGS
PLAEFIPDDD PIAFDSWELA LQATWELDLF GATRARRDSA AQQLRSAEAQ TVAARLAVAA
NTAQGYLQLR ALQGQRALLV EGIEVARELE RIAGLLFHAG EVTRLDVEAT SAERASLEAD
LDELDIHLAE AQLALDTLLA EPPGSSAVHL AASTAVPLAE SRIAAGQPID LLRRRPDLIA
EAARLDAAEL QALAARRDLF PKLAVQAAVG RSGFALGDAI SSASNFARVG ATFGLPLLDY
ANRGAAIELA DAEGEGAYIA FEQALTRALE EVERGLTRIA GQQRRHAALS RTREHREHAH
RLAQRSYELG EANLSEVLDA QRGALQARQR ALEGRAALAT AQVALYVALG GGWQAGGAQA
ADTGAGE
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