| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2730 |
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| Symbol | |
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| ID | 5107881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2995358 |
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| End bp | 2997274 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640503974 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001188217 |
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| Protein GI | 146307752 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.814579 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.595433 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCATCAC GCCATAATGC GGCGAACTCG CCTGCCAGCA CGAGAACCGA GCAATTGACT
GCCACCCTGC GCCTCCTGTT GCTGATGCTG CTGCCAGTCC TGGCCTGGGC GGAGAGCCTG
CCTCTGCCGA TCGGCCAGAC GCCCGTGCTG CCGGGCCCCT ACATGCAGGT CTGGCAAGAT
CCGCAGGGCC AGGCGGATTT CGCCCAGGTC AGCGCCCTGC CCGACTCGGC ATGGCGCGAC
GTAGGCCGGC GCGATGCCAG CTTCGGCTAT GGCGGCAGCG CCTACTGGCT GCGCCTTGAC
CTGCACAACC CCCACTCCCG CCCGTTCGGC TGGGTGCTGC TGATCGGCAA CCCGCTGCTC
GACCAGCTCG ACGCCTACGG ACTGGACGGC GAGCGCGTAT ACCGCGCCGG CGATCAGCGC
CCCTTCGACT GGCGCTGGGT GGAGCACCGC CAGTTGGTGC TACCGCTGAA CCTGGAAACG
GGAGAGACGC GGCGCATCTG GCTGCGCATG CAGACCGACG GCTCGGCCAA CCTCAGCGCC
AGCCTGATGA CGCGCGAGGC GTTCGACCAT CAGGAGCAAC GCAGCCTGCT GCTGCAGGGC
CTGTTCTTCG GTGCGCTGCT GGCGATGTTC GTCTACAACC TGAGCATCTT CTGCATCACC
CACGACCGCA ATTACCTCTG GTACAGCCTG TTCGTCGCCG GTTTCAGCCT CTATCAGTTC
ATCCAGCTCG GCTTCGCCCT GCAATGGCTG TGGCCCAACG CCATGGCCTG GCATCAACTG
AGCTTTCCGC TCAGCTCGGC CCTGGCCACC CTGTTCGGCA TCCACTTCAC CCAGGGCGTG
CTGGAACTGG ACAAGGCGCC GGCGCCTTAC CGCTGGGTCG TGCAATCGCT CAAGGCCTGC
ACCTGGCTGG TCGTGGCCAT GGCCCTGTTC GGCCCCTACA CGCCGGCATT GTTCGGCAGC
TTCATTCTGC TGGGGGCCTG CGCCGTGGCC GCCTTCCTGA TCACCCTGCT GCGCTGGCGC
GCCGGCTTTG CGGCTGCGCG CCTGTTCGCC CTCGGCTGGT TCGTGCTGAT AGCCGCAAGC
CTGGCCAGCA TCCTCAGCGG CACCGGCCTG CTGCCTTATT CGCTGCTGAC CCTGCATGCC
CAGCAGATCG GCGGGCTGAT CGAGATGACG GTCTTCTCCA TCGCCCTGGC CGCCCGCATC
CGCCATATTC AGGAAGCCAA GCGCCAGGCC CAGACTCAGC TGATCGCCCA GGAGCGTCAT
CTGCGCGCCG AACAGGCCAG GCACCTGGAA CTGCAGACGC AGATCAGCGA AAGCCTGGAG
CAACGCGTGC AGGAGCGTAC CGCCACGCTG CAGGAAACCC TGCACCAACT GTCCAACGCC
AACCTGCGCC TGGCAGAACT CAATCGCCGT GACGGCCTGA CCGGTCTCTT CAACCGCCAG
ACCCTCAGCG AAGAGCTGAC ACGGGCCTGT GCCCGCGCCG AGCGCGGCAA GCAGTCAGTG
GCCATCCTGA TGCTGGATCT GGACCATTTC AAACAGGTCA ACGACCGCTA TGGCCACCTC
GCCGGGGATG CCTGCCTGCG CCATGCGGCG CAACGCATCC AGCAGCGCCT GCGCAGCAGC
GATCTGCTGG CCCGCTTCGG CGGCGAGGAG TTCGTCGCCC TGCTCGACAA CACCAGCCTG
GACGGCGCGC TCGATCTGGC CGAGCAATTG CGCGACGATC TGGCCCGGCA TCCCTGCCCC
TACCAGCAGC ATTCGATACC GCTGAGCCTG AGCATCGGCC TGCACGCCGG CGTGCCGCAT
GACCCGAGCT GCGGCGAGCA CTGGCTCGAC CTGGCCGATC GCGCGCTGTA TCGCGCCAAG
GCAGGCGGCC GCAACCAGGT CGTCAGCTAC GAAGCCAAGG CCTTCGACGG CGCCTGA
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| Protein sequence | MPSRHNAANS PASTRTEQLT ATLRLLLLML LPVLAWAESL PLPIGQTPVL PGPYMQVWQD
PQGQADFAQV SALPDSAWRD VGRRDASFGY GGSAYWLRLD LHNPHSRPFG WVLLIGNPLL
DQLDAYGLDG ERVYRAGDQR PFDWRWVEHR QLVLPLNLET GETRRIWLRM QTDGSANLSA
SLMTREAFDH QEQRSLLLQG LFFGALLAMF VYNLSIFCIT HDRNYLWYSL FVAGFSLYQF
IQLGFALQWL WPNAMAWHQL SFPLSSALAT LFGIHFTQGV LELDKAPAPY RWVVQSLKAC
TWLVVAMALF GPYTPALFGS FILLGACAVA AFLITLLRWR AGFAAARLFA LGWFVLIAAS
LASILSGTGL LPYSLLTLHA QQIGGLIEMT VFSIALAARI RHIQEAKRQA QTQLIAQERH
LRAEQARHLE LQTQISESLE QRVQERTATL QETLHQLSNA NLRLAELNRR DGLTGLFNRQ
TLSEELTRAC ARAERGKQSV AILMLDLDHF KQVNDRYGHL AGDACLRHAA QRIQQRLRSS
DLLARFGGEE FVALLDNTSL DGALDLAEQL RDDLARHPCP YQQHSIPLSL SIGLHAGVPH
DPSCGEHWLD LADRALYRAK AGGRNQVVSY EAKAFDGA
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