| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2717 |
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| Symbol | truA |
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| ID | 5107868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2979742 |
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| End bp | 2980605 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640503961 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_001188204 |
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| Protein GI | 146307739 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.0374382 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGACG TAGTACCTGT AGCGGCCGCC GAAATGGCGG CCGCTGGCTT TTCCAGAATC
GCCCTGGGTC TCGAGTACAA GGGCGCGCGT TACCGTGGCT TCCAGCGCCA GGCCGGCAAT
GTCGCTTCGA TTCAGGGTTG TCTGGAAAGC GCGCTGTCCA AGGTTGCTGG CGGTGAGCCG
ATTAACATCA TGTGCGCCGG CCGCACCGAC GCATCGGTGC ACGCCAGCGG CCAGGTGGTG
CATTTCGATA CCGCCGTCGA GCGTCCGCTG CATGCCTGGA TCATGGGCGC CAACATGAAC
CTGCCCAATG ACATCAGCGT GACCTGGGCC AGGGTCATGC CTGCGCACTT TCATGCCCGT
TTCAGCGCCA TGGCGCGCCG CTATCGCTAT GTGATCTACA ACGATCCGAT CCGCCCGGCG
CACATGGCCG AAGAGGTGAC CTGGAATCAC CGTCCGCTGG ACGTGACGCG GATGCGCGAA
GCGGCGCGCG CGCTGGTGGG GACGCATGAT TTCAGCGCTT TTCGCGCCAC CCAGTGCCAG
GCCAAGTCGC CGATCAAGAC CGTGCACCAT CTGCAGGTGA TCGAGCATGG CTGCTTCATT
GTGCTGGATA TCCGCGCCAA TGCCTTCCTC CATCACATGG TGCGCAATAT TGCCGGCGTG
CTGATGGCCA TTGGCGCCGG CGAGCGACCG GTCGAGTGGG CGCGCGAGGT GCTCGAGCGC
GCAGACCGGC GCAGCGGTGG GGTGACAGCC CATCCTTACG GGCTTTATCT GGTGCAGGTG
GAGTACCCGC AGGAGTTCGA GTTGCCGCAG CGTTACCTGG GGCCGCATTT CCTCTCTGCG
CTGGCCGACG TGCGACAGGG CTAG
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| Protein sequence | MSDVVPVAAA EMAAAGFSRI ALGLEYKGAR YRGFQRQAGN VASIQGCLES ALSKVAGGEP
INIMCAGRTD ASVHASGQVV HFDTAVERPL HAWIMGANMN LPNDISVTWA RVMPAHFHAR
FSAMARRYRY VIYNDPIRPA HMAEEVTWNH RPLDVTRMRE AARALVGTHD FSAFRATQCQ
AKSPIKTVHH LQVIEHGCFI VLDIRANAFL HHMVRNIAGV LMAIGAGERP VEWAREVLER
ADRRSGGVTA HPYGLYLVQV EYPQEFELPQ RYLGPHFLSA LADVRQG
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