| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2563 |
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| Symbol | |
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| ID | 5108030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2824851 |
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| End bp | 2825396 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640503807 |
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| Product | 2'-5' RNA ligase |
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| Protein accession | YP_001188051 |
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| Protein GI | 146307586 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1514] 2'-5' RNA ligase |
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| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.043811 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000000000000955583 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCAACG ACCCGCTGCG TCCGTTCTTC GCCCTGCCCT GTCCGCCGCA CCTGGCTGCG
GCGATCGGTG CCTGGCGTGC CGACGCCCTT GGCGCAGGCA AGGCGGTGGC CGTGCATAAC
CTGCATCTGA CCCTGGCCTT TCTCGGTTCG CAGCCGGCCA GTTGCGTGGC GCCGCTGCTG
GCCCTGGCAA CCGAGATACA GGGTGAGCGC TGCACCCTGC AGCTGGATCG CCTCGGCCTG
TGGCGCGGCG GCCTGCTGCA TCTGGCGCCC AGTCAGGTGC CGCAAGCGCT GGAACGACTG
CAGCAGCAGC TGCATGCACG TCTGCTGGCG GCCAGCTTCG TGTTGGAAGA GCGCGCCTTC
CGCCCCCACC TGACCCTGGC CCGCCACTAC CCGAACCCGC CAAACTGCCC GGCCCCAACC
TTCGATTGGC CGCTGCGCCA TTTCGCCCTG TTTTGTTCGG AAAACGATGG CCGGGGCACC
CGCTATCGCC AGCTCGGGCA GTGGCCGTTG CGGCCTTCGA CCCCAGCCGG GCGTAGCGCC
CCGTAA
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| Protein sequence | MTNDPLRPFF ALPCPPHLAA AIGAWRADAL GAGKAVAVHN LHLTLAFLGS QPASCVAPLL
ALATEIQGER CTLQLDRLGL WRGGLLHLAP SQVPQALERL QQQLHARLLA ASFVLEERAF
RPHLTLARHY PNPPNCPAPT FDWPLRHFAL FCSENDGRGT RYRQLGQWPL RPSTPAGRSA
P
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