| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2549 |
|---|
| Symbol | |
|---|
| ID | 5108016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2812943 |
|---|
| End bp | 2813896 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640503793 |
|---|
| Product | 2-dehydropantoate 2-reductase |
|---|
| Protein accession | YP_001188037 |
|---|
| Protein GI | 146307572 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1893] Ketopantoate reductase |
|---|
| TIGRFAM ID | [TIGR00745] 2-dehydropantoate 2-reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0215033 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00000000817655 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCAAT CCCCCGCGCC GCGCGTCGGC ATCATCGGCA CCGGTGCCAT CGGCGGCTTC
TATGGTCTGC TGCTGGCCCG CGCCGGGCTC GACGTGCATT TCCTGCTGCG CAGCGAATAC
GCCGCAGTCG CCGAGCGCGG CCTGCAGCTC AACAGCAAGG TGCACGGCGC CCTGCAGCTG
GCGCCGGTGC AGGCCTATCA GCGGGTCGAG GACATGCCGG CGTGCGACTG GCTGCTGGTT
GGCGCCAAGA CCACCGCCAA TGCCGAACTC GCGCCACTGA TCGCCAGGGC GGCGGCGCCT
GGCGCCAAGG TCGTCCTGCT GCAGAACGGC CTGGCGGTGG AGGACGAGCT GCGCCCGCTG
CTGGCGGAGG GGCTGCATCT GCTCGGCGGG CTCTGCTATA TCTGCGTCCA TCGCAGTGGC
CCCGGCGTGA TCGAACACCA GGCGCTGGGC GCGATCAATC TGGCCTATCA CTCCGGCCCG
GCGGCTGATG ACGAGCGTCT GGCGCTGGTC GAGGAGGGCG CTGCCATGTT CCGCAGCGCC
GGCCTGGATT CGGCCGCCAT GCCCGATCTG GCGCAGACGC GCTGGCAGAA GCTGGTGTGG
AACGTTCCTT ACAACGGCCT GTCGGTGTTG CTCGATGCCG ATACCCGCCA GCTGATGGGC
AACCCCGACA GTCGTGCGTT GATCCGCGAC ATGATGCTGG AGGTGGTGCA GGCCGCCCAG
GCGCTGGGTC ATGGCATGCC GGATAACTAC GCCGACAAGC TGCTGGCAGC CACCGAGCGC
ATGCCCGACT ATCTGCCCAG CATGTATCAC GACTTCGCCC AGAGGCGGCC GGCGGAGTTG
CACGCCATTT ATGCGGCGCC TCTGGCGGCA GCCGCTGCCG TGGGCTTCGA GATGCCCAAG
GTGCGTGCGC TGTATCAGGC GCTGCGTTTC ATTCAGGCTC GTCAGGAGGC CTAG
|
|---|
| Protein sequence | MSQSPAPRVG IIGTGAIGGF YGLLLARAGL DVHFLLRSEY AAVAERGLQL NSKVHGALQL
APVQAYQRVE DMPACDWLLV GAKTTANAEL APLIARAAAP GAKVVLLQNG LAVEDELRPL
LAEGLHLLGG LCYICVHRSG PGVIEHQALG AINLAYHSGP AADDERLALV EEGAAMFRSA
GLDSAAMPDL AQTRWQKLVW NVPYNGLSVL LDADTRQLMG NPDSRALIRD MMLEVVQAAQ
ALGHGMPDNY ADKLLAATER MPDYLPSMYH DFAQRRPAEL HAIYAAPLAA AAAVGFEMPK
VRALYQALRF IQARQEA
|
|---|
| |