| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2448 |
|---|
| Symbol | |
|---|
| ID | 5107324 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2711798 |
|---|
| End bp | 2713783 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640503692 |
|---|
| Product | transglutaminase domain-containing protein |
|---|
| Protein accession | YP_001187936 |
|---|
| Protein GI | 146307471 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.401326 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAT TGCCGGGCAT TCCGCGTATC GCCCTGACCT GGCTGCTGGT GGCCCAGCTG
CTGGTGATCC TGCCGCACCT GCTGCATTTG CCGCTGTGGG TGATCGCCCT CTGGCTGGGC
GCTGCCGGCT GGCGCGTGCA GATCTTCCGC ATGCGTGCGC GCTATCCCAA CGGCTGGGCC
AAGGGTGGCC TGATGCTGGT GGTGCTGGCG GGTGTCCTGC TGTCGCGAGG GACGCTGGTC
GGTCTCGACG CCGCGGTGGT CCTGCTGATC GCCACCTTCA TCCTCAAGCT GCTGGAAATG
CGGACCCGGC GTGATGCGCT GGTGCTGATC TTCCTCGGCT TCTTCTGCGT GGTGACCGCC
TACCTGTTCG AGGACGGCAT CGTCGCGGCG CTGTACAGCC TGTTGCCGGT GACGGCGCTG
CTCGCCGCGC TGGTGGGCCT GCAGCACAGT GGCTTCGCCG AACGCCCCTG GCCCACTCTG
CGCCTGGCCG GCGGTCTGCT GTTGCAGGCC TTGCCGCTGA TGCTGCTGCT GTTCGTGTTC
TTTCCGCGCA TGGGGCCGCT GTGGTCGCTG CCGATGCCCA GCGACAAGGG CGTGACCGGC
CTGTCGGACA GCATGGAGCC GGCGGATATC GCCGAGCTGA GCCGCTCCTC GGCCCTGGCC
TTTCGTGCCA GCTTCGAAGG GCCGGTGCCA CCGCGCGATC AGCTGTACTG GCGGGCGCTG
ACGCTGGAGC GTTTCGATGG CCGGCGCTGG TCGCAGTCCA ACTACGCCGA ATTGCCGTCG
GCGCCGCAAT GGCGCAAGGC GGGCGAGCCG CTGGATTACA GCATCGTCAT GCAGCCCAGC
GGCAAGCCCT GGCTGTTCGC CCTGGATGTC GGCGAGGTGG CGCAGAACGA AAGCCGCATG
ATGACCGACT TCCGCTGGCA ACGGCGGCGC CCGGTGGATC GCCCCTTGCT CTATCAGGCG
CGCTCCTGGC CGCAGGCGCT GCGTGAGGCG GATGCCGAGC CGCCTGCACT GCGCCGCGCG
CTGCAGCTGC CCGAGCAGGG CGACCCGCGC AGCCGAGCCT GGGCGGCCGA ACTGCAGCGC
GAGCACCCGC AGGCCGAGGC GCTGGTCGCC GCGCTGCTGC AGCATTTCAA TCGCGAACCC
TACGTCTACA CCCTGCGTCC GCAGCCGCTG GGACGCGACA GCATCGACGA ATTCCTGTTC
GACACCCGCC GTGGATTTTG CGCGCACTAC GCCGGCGCCA TGACCTTCGT GCTGCGCGCC
GCCGGCATTC CCGCGCGTGT GGTGACCGGT TACCAGGGCG GCGAGCTCAA TCCCGGCGGC
AACTATATCC AGGTGCGTCA GTTCGACGCC CATGCCTGGG TGGAGTACTG GCTGCCCGAG
CAGGGCTGGC GCAGCGTCGA CCCCACCTAT CAGGTGGCGC CGCAGCGTAT CGAGCTGGGG
CTGGAAGACG CATTGGGCGA AGAAGACGGC TTTCTCGACG ATCAGCCGTT CTCGCCGCTG
CGATACCGCG AACTGGCCTG GCTCAACCAG CTGCGTCTGG GCTGGGAGAA CCTCAATTAC
GGCTGGCAGC GCTGGGTGCT CGGTTATCAG GGCGAGCAGC AGCTGAAGCT GCTGCACAAC
TGGTTCGGCA GCCTCGACTG GCAGCGCCTG GCCTTGGCGC TGGTGGGCAG CGGGACCTTA
CTGATCGGCT TGCTCGCGCT GTGGCTGCTC AAGCCCTGGC AGCAGCGGGC GGACCCGCAA
CGCCAGGCCT TCCGCCGCTT CGAGCGGCTG CTGGCGCGGC ACGGCGTGCG GCGTCAGGCG
GGCGAAGGCG CGCGAGCCTT CGCCGAACGC GCCGGCCGCG AACTGCCGGC TCAGGCCCCG
GCGATCCAGG CCTTTGCCCG CTGCTTCGAG GCCCAGCGCT ACGCCGGTCA GCCTGCTTCC
CGGGCGGCTT TGCGTCAGGC CCTGGGTGAG CTGCGCAGAG CCTTGCCCTG GCGCCTGTTG
CGTTAG
|
|---|
| Protein sequence | MSALPGIPRI ALTWLLVAQL LVILPHLLHL PLWVIALWLG AAGWRVQIFR MRARYPNGWA
KGGLMLVVLA GVLLSRGTLV GLDAAVVLLI ATFILKLLEM RTRRDALVLI FLGFFCVVTA
YLFEDGIVAA LYSLLPVTAL LAALVGLQHS GFAERPWPTL RLAGGLLLQA LPLMLLLFVF
FPRMGPLWSL PMPSDKGVTG LSDSMEPADI AELSRSSALA FRASFEGPVP PRDQLYWRAL
TLERFDGRRW SQSNYAELPS APQWRKAGEP LDYSIVMQPS GKPWLFALDV GEVAQNESRM
MTDFRWQRRR PVDRPLLYQA RSWPQALREA DAEPPALRRA LQLPEQGDPR SRAWAAELQR
EHPQAEALVA ALLQHFNREP YVYTLRPQPL GRDSIDEFLF DTRRGFCAHY AGAMTFVLRA
AGIPARVVTG YQGGELNPGG NYIQVRQFDA HAWVEYWLPE QGWRSVDPTY QVAPQRIELG
LEDALGEEDG FLDDQPFSPL RYRELAWLNQ LRLGWENLNY GWQRWVLGYQ GEQQLKLLHN
WFGSLDWQRL ALALVGSGTL LIGLLALWLL KPWQQRADPQ RQAFRRFERL LARHGVRRQA
GEGARAFAER AGRELPAQAP AIQAFARCFE AQRYAGQPAS RAALRQALGE LRRALPWRLL
R
|
|---|
| |