| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2327 |
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| Symbol | |
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| ID | 5108562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2567442 |
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| End bp | 2568227 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640503569 |
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| Product | virulence protein, SciE type |
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| Protein accession | YP_001187817 |
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| Protein GI | 146307352 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.0365801 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCCG ATGAACTGCT ACGTGCCGGC AAGCTCGATG AGGCGCTCAA CGCGCTGCAG
GATCAGGTGC GGGCGCAGCC GTCCAATGCG GCGTTGCGCG TGTTCCTGTT CCAGCTGCTG
GCGGTGCTCG GGCAATGGAG CCGCGCGCAG AACCAGTTGA AGGTGGCAGG CGAGCTGGAC
GCGTCCACCC TGGCCATGGT GCAGACCTAC CGTTCGGCGC TGGAATGCGA GGCGCTGCGT
GCCGAAGTAT TCGCCGGACG CCTGACACCG GTGCTACTGG GCGAACCCGC GCCCTGGCTC
GCGCCCCTGA TCCAGGCGCT GCAAGTGGAT GCGCAGGGCC ATGCCGAGGC AGCACAGGCG
CTGCGCGATC AGGCCTTCGA AGCCGCACCG GCGGTACCTG GCGAACTCAA TGGCGAAGCC
TTCGCCTGGT GCGCCGATGC CGACCCGCGA CTCGGCCCGG TGCTGGAGCT GATCGTCAAT
GGCCGCTACG TCTGGCTGCC GATGGAGAAC ATCGCCAGCC TGACGTGCGA GGCGCCCAGC
GATCTGCGCG ACCTGGTGTG GATGCCCGCC GAGCTGACCC TGCGAAACGG CGGCAGCACC
GTGGCGCTGA TTCCCAGCCG TTATCCCGAC ACCGTCCAAC TCGGCGATGA CGCGGCGCGC
CTGGCACGCA AGCTGGACTG GCTCGACAAC GGCCTGCCCA TCGGTCAGCG GCTGTTCGCC
ACCGACCTGG GCGATACCGC GTTGTTCGAG CTGCGCAGCC TCACCTTCGG CGCAGGAGCA
GCCTGA
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| Protein sequence | MNADELLRAG KLDEALNALQ DQVRAQPSNA ALRVFLFQLL AVLGQWSRAQ NQLKVAGELD
ASTLAMVQTY RSALECEALR AEVFAGRLTP VLLGEPAPWL APLIQALQVD AQGHAEAAQA
LRDQAFEAAP AVPGELNGEA FAWCADADPR LGPVLELIVN GRYVWLPMEN IASLTCEAPS
DLRDLVWMPA ELTLRNGGST VALIPSRYPD TVQLGDDAAR LARKLDWLDN GLPIGQRLFA
TDLGDTALFE LRSLTFGAGA A
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