| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2316 |
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| Symbol | |
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| ID | 5108551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2554174 |
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| End bp | 2557689 |
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| Gene Length | 3516 bp |
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| Protein Length | 1171 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640503558 |
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| Product | ImcF domain-containing protein |
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| Protein accession | YP_001187806 |
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| Protein GI | 146307341 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00185575 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000165437 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAGGCCT TCTTCAATTT CTGTGTGCGC TGGCTCGTGC CGATTCTCGG TCTGATCGCC
CTCAGCCTGG TGATCTGGTT CGTCGGCCCG CTGATCGCCA TCGGCGGCTT CGAGCCGCTG
GCCTCGGCGT CCGTGCGCTG GATTCTGATC GCGCTGCTGT TCCTGATCTG GATCGGCTTT
CGCGTCCTGC GCCTGATCCA GACGCGACGC AACGCCGCCA AGGTCATGCA GGGGCTGGTG
GCCGTGGCGC CGGATGCCGC CAGCGTGGCC ACCGCCGAGG AGCTGGCGAC CCTCAAGCAG
CGCATGGACG AAGCCCTGCA ACTGCTGAAG AAGGCCAAGC TCGGCGGCCA GGAGCGGCGC
AACCTCTACG AGCTGCCCTG GTACGTGATC ATCGGGCCGC CCGGTTCGGG CAAGACCACC
GCGCTGGTCA ACTCCGGGCT CAACTTCCCC CTGGCCGAGC ATATGGGCGG CGGCGCCATC
CGTGGCGTCG GCGGCACGCG CAACTGCGAC TGGTGGTTCA CCGACGAGGC CGTGCTGCTG
GATACCGCCG GCCGCTACAC CACCCAGGAC AGCCACGCCG AGGTGGACAA GGCCGCCTGG
CTGGGCTTTC TCGACCTGCT CAAGAACCAG CGTAAGCGCC GCCCCATCGA CGGCGCATTC
ATTGCCATCA GCCTGTCCGA CCTGCTGCTG GGCAGCGAGA GCGAGCGCGC CGCCCATGCC
CGTTCGATCC GCGCGCGGGT GCAGGAGCTC TACGCCCAAC TCGGCGTGCG TTTCCCCATC
TACGTGATGC TGACCAAGTT CGACCTGGTG CCAGGCTTCA TGGAGTTCTT CGACGACCTC
GGCAAGGAGG AGCGCGGTCA GGTCTGGGGC ATCACCTTCC CCCTGGACGA CGGCAAGAGC
GGAGAAGGGC CGCTGGCTGG CTTCAAGCAG GAGTTCGCCG CCCTCGAGGA GCGCCTGACC
CAACGCCTGG TGGAGCGTCT GCAGCAGGAG CGCGACCCCA ACCGGCGCGA CCTGATCTAC
GGCTTCCCGC AGCAATTCGC CGCGCTGCGC GACAACCTCG CCAGCTTTCT CGACGGCGTG
TTCAAACCCA ATCCCTACGA GGAGCGGGTG CTGCTGCGCG GCGTCTATTT CACCAGCGGC
ACGCAGGAAG GCAGCCCCAT CGACCGCCTG ATCGGTGCCA TGGCGCAGAG CATGAACCTC
GACCGCCAGC ACCTGGCGCG GCAGACCGGC ACCGGGCGCA GCTACTTCAT CGAGCGGCTG
TTTCGCGAGG TGGCCTTCGG CGAGCGCGGC CTGGTCGGCG CCAATCCCAA GGTGGAGCGC
CGACGTAAGT GGATCACCCG CGGCGCCCTG GCCGCTTCCG TGCTGCTGTT CGTCGCGGTC
GCCAGCGTCT GGCTGGTCAG CTACAACGCC AACCAGGCCT ATATCGCCGA GGTCGACGCG
CGGGTGGCGC CGCTCAAGGG CCAGCTGGAG GCCCTGAGTC CGGCGCAGCG CGAAGTGCTG
GCGGTGCTGC CGCTGCTCAA CGCCATCCGC CACGTGGCGG ACAACCCGCC GTCCTGGGCC
GCCGGCTTCG GCCTTTACCA GGGCGACATG CTCGGCGCCG AAGCCGGCAG CGTCTATCGC
AAGCTGCTGA TCGCGGTGAT GGCGCCGCGG CTGCTGACCC GCATCGAGGA ACAGCTGCGC
AGCGGCGGCA ATTCCGACTT CCTCTACGAG GGGCTCAAGG CCTATCTGAT GCTGGCCAGC
GCCGACCAGT ACGATGCGGA CTTCATCAAG GCCTGGATCA ACCTGGACTG GGACCAGAGC
CTGCCGCGCG ATCTGGCGCC GGATCAGCGC CTGGCCCTCG GCGAGCACCT CGATGCGCTG
TTCGCGCGCA AGCCGCCACC GGCGCGGCTG GACGAGAACC TGATCGAGGA CCTGCGTCGC
CAGCTGCAGC AGATGTCGGT GGCGCAGCGC GTCTACAACC GGGTCAAGCG ACAGAAGCTG
CCCGACGGTC TGCCGGACTT TCGCATCAGC GAAGCGGCCG GGCGCGACGC CGCGCTGGTG
TTCACCCGCA AGAGCGGCAA GCCGCTGAAC GATCCACTGA GCGGCTTCTA CACCTACCGC
GGCTATCGCC AGGTGTTCAT GGTCGCCAGC CTCAGCCAGT CCGGCGCGCT GGCCGAGGAG
CAGTGGGTGC TGGGCCGACC GCTGGCGGAC AACCAGGACG CCGCCACCCT GGCCCTGGAG
GTACGCAACC TGTACTTCCA GGATTTTCTC GGCCAATGGG AAAGCCTGCT CGGCGATATC
GATTTCGTCG CCATCATCAG CGTGGCCCAG GCGGCCGACG TGATGCGCGT GCTGTCCGGG
CCCAATTCGC CGCTCAAGCA GCTGCTCGAG GCGGTGGCGC GGGAAACCGA CCTGCAGCAG
GAAGATCGCC TGCTCGCCGA CAAGCTCAAG GCCGCCGACG GCACGGTGGA CAAGCTCAAG
CAGCAGCTCG GCTCGCTGGT CGGCCAGGGG GCGCAAAACC AGCCGCAGGC CGCGCCCCAG
GTGGACCCGA TCACCGCCCG CTTCAACGAG CTGAACAGCC TGGTGCGCAA GCCCGAGGGT
AGCAACAGTG CGCCCATCGA CGACCTGCTG GCGCAGTTCA ACGAACTCTA CGTGCAGCTC
AGCGCCATGA GCGGCGCCAG TGGTGACGCC TTGCTCGGCG AGGCGAAGAA TCAGGCGGTG
GCCTCGGCGC AGCGGGTCAA GCTGGCCGGC GAACGCCAGC CGCCGCTGGT GCAGAACCTG
GTCAACTCGG TGGTCAGCGC CACCACCAAC AGCATGATGG GCGGCATCCG CAGCCAGCTC
AACGCCGCCT GGGTGGCCGA GGTGGTCAAC GTCTACCGCC AGTCGCTGGC CGGCCGCTAC
CCGCTGGACA GCGGCAGTAC GCGTGACGCC ACGCTGGAGG ACTTCGGCAA CTTCTTCGGC
GTCGGCGGGG TGATGGACAA CTACTTCCGC AAGTACCTGC AGCCCTACGT CGACACCTCG
GCGACCACCT GGCGCTGGCA GCCGGGGGCG GCCGAGCGCT TGGGGATAGG CAGCGGCGTG
CTGCAGACCT TTCAGCGCGC GGCGGCGATC CGCGATGCCT TCTTCCGCTC CGGCGGCACC
CAGCCCACGG TGCGCTTCGA ACTCAAGCCG GTGGCCATGG ACGCGGCGAT CAGCCAGTTC
ATCCTCGATC TGGACGGCCA GCAGATGACC TACGACCACG GCCCCAGCCG GCCGGTGGCC
ATGCAGTGGC CGAGCCCCAA CAGCCTGGGC GTGGTGCGCC TGTCGATCAC CCCGCCGACC
AGCGCCGGGC GTTCCGGCCT GACCCTGGAC GGGCCCTGGG CCTGGTTCCG CCTGCTCGAG
CAATCGGACC TGACCCCCGG CGCTTCGCCG GACCGTTTCA CCCTGCGCCT GCGCGTGGAC
AACGCCAGCG TGGCCTGCGA ACTGCGCGCC AGCAGCGCCT TCAATCCCTT CCGTGGCCGT
GTGCTGAGCG GCTTCAGCTT GCCGGAGCGG TTATGA
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| Protein sequence | MKAFFNFCVR WLVPILGLIA LSLVIWFVGP LIAIGGFEPL ASASVRWILI ALLFLIWIGF
RVLRLIQTRR NAAKVMQGLV AVAPDAASVA TAEELATLKQ RMDEALQLLK KAKLGGQERR
NLYELPWYVI IGPPGSGKTT ALVNSGLNFP LAEHMGGGAI RGVGGTRNCD WWFTDEAVLL
DTAGRYTTQD SHAEVDKAAW LGFLDLLKNQ RKRRPIDGAF IAISLSDLLL GSESERAAHA
RSIRARVQEL YAQLGVRFPI YVMLTKFDLV PGFMEFFDDL GKEERGQVWG ITFPLDDGKS
GEGPLAGFKQ EFAALEERLT QRLVERLQQE RDPNRRDLIY GFPQQFAALR DNLASFLDGV
FKPNPYEERV LLRGVYFTSG TQEGSPIDRL IGAMAQSMNL DRQHLARQTG TGRSYFIERL
FREVAFGERG LVGANPKVER RRKWITRGAL AASVLLFVAV ASVWLVSYNA NQAYIAEVDA
RVAPLKGQLE ALSPAQREVL AVLPLLNAIR HVADNPPSWA AGFGLYQGDM LGAEAGSVYR
KLLIAVMAPR LLTRIEEQLR SGGNSDFLYE GLKAYLMLAS ADQYDADFIK AWINLDWDQS
LPRDLAPDQR LALGEHLDAL FARKPPPARL DENLIEDLRR QLQQMSVAQR VYNRVKRQKL
PDGLPDFRIS EAAGRDAALV FTRKSGKPLN DPLSGFYTYR GYRQVFMVAS LSQSGALAEE
QWVLGRPLAD NQDAATLALE VRNLYFQDFL GQWESLLGDI DFVAIISVAQ AADVMRVLSG
PNSPLKQLLE AVARETDLQQ EDRLLADKLK AADGTVDKLK QQLGSLVGQG AQNQPQAAPQ
VDPITARFNE LNSLVRKPEG SNSAPIDDLL AQFNELYVQL SAMSGASGDA LLGEAKNQAV
ASAQRVKLAG ERQPPLVQNL VNSVVSATTN SMMGGIRSQL NAAWVAEVVN VYRQSLAGRY
PLDSGSTRDA TLEDFGNFFG VGGVMDNYFR KYLQPYVDTS ATTWRWQPGA AERLGIGSGV
LQTFQRAAAI RDAFFRSGGT QPTVRFELKP VAMDAAISQF ILDLDGQQMT YDHGPSRPVA
MQWPSPNSLG VVRLSITPPT SAGRSGLTLD GPWAWFRLLE QSDLTPGASP DRFTLRLRVD
NASVACELRA SSAFNPFRGR VLSGFSLPER L
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