| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2273 |
|---|
| Symbol | katE |
|---|
| ID | 5108508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2501421 |
|---|
| End bp | 2503562 |
|---|
| Gene Length | 2142 bp |
|---|
| Protein Length | 713 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640503515 |
|---|
| Product | hydroperoxidase II |
|---|
| Protein accession | YP_001187763 |
|---|
| Protein GI | 146307298 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0693] Putative intracellular protease/amidase
[COG0753] Catalase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0878038 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.00653218 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGC AATCGAAAGC CGCCGAGAAC GGCAGCCAGA TGGCCGGTAC CGATACCCTC
GACCGGGGTA ATGGCAATGC CAAGCTCGAT CAACTCGAAG CCTTCCGTGA GGACGCGACG
GGGGAGGCGC TGACCACCAA TACCGGCACG CGTATCGCCG ACAACCAGAA CAGCCTGCGC
GCGGGTGAGC GCGGACCGAC GCTGATGGAA GATTTCATCA TGCGCGAGAA GATCACCCAC
TTCGATCACG AGCGCATTCC CGAGCGTGTG GTGCATGCCC GCGGCGCGGC GGCGCACGGC
TACTTCGAGG TGACGGATGC GGCCAGCGAC CTGACCTGCG CCGCCTTTCT CGGCGAGGTG
GGCAAGCGCA CTCCGGTATT CGTGCGCTTT TCCACCGTGC AGGGCCCCAG GGGCTCGGCC
GACACCGTGC GCGACGTGCG CGGCTTCGCC GTGAAGTTCT ACACCGAGGA AGGCAACTTC
GACCTGGTGG GCAACAACAT GCCGGTGTTC TTCATTCAGG ACGCGATCAA GTTCCCCGAC
TTCGTCCATG CGGTCAAACC CGAGCCGCAC AACGAGATAC CCACCGGCGC CTCGGCCCAC
GACACCTTTT GGGACTTCGT CTCGCTGACC CCGGAGTCGG CGCACATGGT GCTCTGGACC
ATGTCCGACC GCGCCATTCC CATCGCCTAC CGCTCGATGC AGGGTTTTGG CGTGCACAGC
TTCCGGCTGG TCAATGCGCA GGGGCAGAGC AAGCTGGTGA AGTTTCACTG GCGCCCCAAG
GCCGGCGTCT GCTCGCTGGT CTGGGACGAG GCGCAGAAGC TCGCCGGCAA GGACCCGGAC
TTCCACCGCC GCGGCCTCTG GGAGGACATC GAGCGGGGCC TCTACCCGGA ATGGGAGCTG
GGCCTGCAGG TGATGAACGA GGAGGACGCG CAGGGCTTCG GCTTCGACCT GCTCGACCCG
ACCAAGCTGG TGCCCGAGGA GCTGGTGCCG ATCCGCGTGG TCGGGCGCAT GGTGCTCAAT
CGCAACCCGG ACAACTTCTT CGCCGAAACC GAACAGGCGG CGTTCCACGT CGGGCACGTG
GTGCCCGGCA TCGATTTCAG CAACGACCCG CTGCTGCAGG GCCGTCTGTT CTCCTACACC
GACACCCAGC TGCTGCGTCT GGGTGGCCCC AACTTCAACG AAATCCCCAT CAACCGGCCG
CTGTGCCCCT TCCACAACAA CCAGCGTGAC GCGCCGCATC GCCAGCAGAT CAATCGCGGC
AGGGCGGCGT ACGAGCCCAA CTCCATCGAC GGCAACTGGC CGCGCGAGAC GCCGCCAGCG
CCGACCGGCG GCGGTTACAG TTCCTATCCC GAGCCCGTGC ACGGCACCAA GATACGGGTG
CGCTCGCCCA GTTTCGCCGA CCACTTTTCC CAGGCGACCC TGTTCTGGCG CAGCATGAGC
GCGACCGAGC AACAGCACAT CGTCGATGCC TACAGCTTCG AGCTGTCGAA AGTCGAGCGT
CTGTACATCC GCGAGCGGCA GGTCAAGGAA ATCCTCGCGC ACATCGACCC GCTGCTGGCA
CTGCGCGTCG CGGAGAACCT GGGTATCGAC CTGGACAGCA CTTCGACCCC GAGCATGGAG
GGCAAAGCGG AGGTTTCCCC TGCGCTCAGC CAGATGAATC TTCTGCCTGG CGACATTCGC
GGGCGCCGCG TCGCGGTGCT GCTCACGCCC GGCTGCAAGG CCGACGAGGT CGGCAGCCTG
AAGAAGATGC TGGAAGGCGC CGGCGCCGTG GCCAAGCTGC TGGCGCCTTC GGCCGCCGCG
CTGAAGGACT CCGACGGCCA GCCCATGCAG CCCGATGGCA GTTTTGCCTC GGAACCTTCG
ATCACCGTCG ACGCCGTGTT CGTACCGGGG GGCGAGTACG TGCTCAAGAC GCTGCAGGAC
GACGGCGTTG CCAAGCACTA CCTGCTGGAG GCCTACAAGC ATCTCAAGCC CGTCGCGCTC
AGCGGCGATG CCGCTCAGCT GGCGGCGATG CTGGGGCTGG AGGAGGACGC CGGGATGCTC
TGCGGCGACA GTTTCGACCC GCTGTACATG CGCTTCGAAA CCGCGCTGAA GCAGCACCGC
ATCTGGGATC GGGAAATGCG CGCCAAGACC ATTCCCGCCT GA
|
|---|
| Protein sequence | MKKQSKAAEN GSQMAGTDTL DRGNGNAKLD QLEAFREDAT GEALTTNTGT RIADNQNSLR
AGERGPTLME DFIMREKITH FDHERIPERV VHARGAAAHG YFEVTDAASD LTCAAFLGEV
GKRTPVFVRF STVQGPRGSA DTVRDVRGFA VKFYTEEGNF DLVGNNMPVF FIQDAIKFPD
FVHAVKPEPH NEIPTGASAH DTFWDFVSLT PESAHMVLWT MSDRAIPIAY RSMQGFGVHS
FRLVNAQGQS KLVKFHWRPK AGVCSLVWDE AQKLAGKDPD FHRRGLWEDI ERGLYPEWEL
GLQVMNEEDA QGFGFDLLDP TKLVPEELVP IRVVGRMVLN RNPDNFFAET EQAAFHVGHV
VPGIDFSNDP LLQGRLFSYT DTQLLRLGGP NFNEIPINRP LCPFHNNQRD APHRQQINRG
RAAYEPNSID GNWPRETPPA PTGGGYSSYP EPVHGTKIRV RSPSFADHFS QATLFWRSMS
ATEQQHIVDA YSFELSKVER LYIRERQVKE ILAHIDPLLA LRVAENLGID LDSTSTPSME
GKAEVSPALS QMNLLPGDIR GRRVAVLLTP GCKADEVGSL KKMLEGAGAV AKLLAPSAAA
LKDSDGQPMQ PDGSFASEPS ITVDAVFVPG GEYVLKTLQD DGVAKHYLLE AYKHLKPVAL
SGDAAQLAAM LGLEEDAGML CGDSFDPLYM RFETALKQHR IWDREMRAKT IPA
|
|---|
| |