| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2195 |
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| Symbol | |
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| ID | 5109140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2427120 |
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| End bp | 2428778 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640503439 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001187687 |
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| Protein GI | 146307222 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0151417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0044454 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGCCT TCGCCGAACT CTACGCGCGG CTGGACGCCA CCACCTCGAG CAACGCCAAG
CTGCAGGCGA TGCAGGAGTA TTTCGCCGAA GCGCCGCCAG CGGATGCGGC CTGGGCGGTG
TACTTTCTGG CCGGCGGCCG CCCACGTCAG GTGGTGCCGA CGCGGGTGCT GCGCGAGCTG
GCCACCCGGC TTGCCGGCCT GTCCGACTGG CTGTTCGAGG AGAGCTACCA GGCCGTCGGC
GATCTGGCGG AAACCATCGC CCTGCTCCTG CCCGAATCGC AGCACGCCTC CGAACAGGGG
CTGGCCTGGT GGCTGGAAGA ACAACTGCTG CCCCTGCGCG GCCTGCCACC CGCGGAGCTG
GCCGAGCGTC TGCCACCTTT ATGGGCGCAG CTGGATCGAC CAAGCCTGAT GGTCAGCCTC
AAGCTGCTCA CCGGCGCCTT TCGCGTCGGC GTCTCTAAGC TGCTGGTGAC CCGTGCCCTG
GCAGGCCTGG CGCAGATCGA CGCCAAGCGC GTGGCGCAGC GGCTGGTGGG GTACACCGAT
CTGTCGCATC GGCCGTCCGC ACAGCGCTAC CTGGCGCTGA TCGCCGCCGA GTCGGAGGAC
GAACACGCCC AGCGCGGCGG CCAGCCCTAC CCCTTCTTCC TCGCCCATCC GCTGCAGCAG
CCATTGGAAC AGTTCGACGC TCAGCTGGGG CCGGCCAGCG ACTGGCTGGT GGAATGGAAG
TGGGACGGCA TTCGCGCGCA GCTGGTCAAG CGCGACGGTC GCCTGTGGTT GTGGTCCCGC
GGCGAGGAGC TGATCACCGA GCGTTTCCCC GAGCTGCACG AACTGGCAGA GGCGCTGCCG
GACGGCAGCG TGCTCGATGG CGAGCTGGTG GCCTGGAAGG AGCCCGCCAC AGGCAGCGGC
GCGGTGTTCG GCATTCAGCC CTTCGCCCTG CTGCAACAGC GCATCGGCCG CAAGACCCTG
AGCAAGAAAC TGCTGGAAGA GGTACCCGCC GCGCTGCTGG CCTACGACCT GCTGGAATGG
CGTGGCGAAG ACTGGCGTTC GCGCCCCCAG GACGAGCGCC GCGCCCGCCT GGAGCTGCTG
GTGGCGGAAG TCGGCGATGC CCGTCTGCAA CTCTCGCCAC AACTCACCGG CCGCGACTGG
CAGGACTTTG CCCGCCAGCG CGAAGCCTCC CGTGAGCTGG GCGTAGAAGG CATGATGCTC
AAACGCCGCG ACTCCCTGTA CGGGGTCGGC CGCACCCGCG ATCTGGGCCT GTGGTGGAAG
TGGAAGATCG ACCCGTTCAG CGTCGATGCG GTGCTGATCT ATGCCCAGCG CGGCCACGGT
CGCCGCGCCA GTCTGTACAG CGACTACACC TTCGCCGTGT GGGACGATTC CACGCCTGGC
GAGCGCGTGC TGGTGCCCTT CGCCAAGGCC TACTCGGGCC TCACCGACGA CGAGATGCGC
AAGGTCGATG CGATCATCCG CAAGACCACC GTGGAGAAAT TCGGCCCGGT GCGCAGCGTC
ACTCCGACCC TGGTGTTCGA GCTGGGTTTC GAGGGCATCG CCCTGTCCAA GCGGCACAAG
AGCGGCGTCG CCGTACGCTT TCCGCGCATG CTGCGCTGGC GTACCGACAA GCGGGTGGAG
GACGCCGACA CCCTGGCCAC GCTGCAAGGC CTGCTCTGA
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| Protein sequence | MKAFAELYAR LDATTSSNAK LQAMQEYFAE APPADAAWAV YFLAGGRPRQ VVPTRVLREL
ATRLAGLSDW LFEESYQAVG DLAETIALLL PESQHASEQG LAWWLEEQLL PLRGLPPAEL
AERLPPLWAQ LDRPSLMVSL KLLTGAFRVG VSKLLVTRAL AGLAQIDAKR VAQRLVGYTD
LSHRPSAQRY LALIAAESED EHAQRGGQPY PFFLAHPLQQ PLEQFDAQLG PASDWLVEWK
WDGIRAQLVK RDGRLWLWSR GEELITERFP ELHELAEALP DGSVLDGELV AWKEPATGSG
AVFGIQPFAL LQQRIGRKTL SKKLLEEVPA ALLAYDLLEW RGEDWRSRPQ DERRARLELL
VAEVGDARLQ LSPQLTGRDW QDFARQREAS RELGVEGMML KRRDSLYGVG RTRDLGLWWK
WKIDPFSVDA VLIYAQRGHG RRASLYSDYT FAVWDDSTPG ERVLVPFAKA YSGLTDDEMR
KVDAIIRKTT VEKFGPVRSV TPTLVFELGF EGIALSKRHK SGVAVRFPRM LRWRTDKRVE
DADTLATLQG LL
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