| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2083 |
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| Symbol | |
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| ID | 5109817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2308401 |
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| End bp | 2309633 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640503327 |
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| Product | methylitaconate delta2-delta3-isomerase |
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| Protein accession | YP_001187576 |
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| Protein GI | 146307111 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2828] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR02334] probable AcnD-accessory protein PrpF |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.327922 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.0837253 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCTCC CCGGATTGCA TCCGGGCTAC TTCAGGACTG CACTCATGGC TCATCTGCCT
CAAGTGAAAA TCCCCGCCAC CTATATCCGT GGCGGCACCA GCAAGGGCGT GTTCTTCCGC
CTGCAGGACC TGCCCGAGCG CTGTCAGGTG CCGGGCGAGG CCCGCGACAA GCTGTTCATG
CGCGTGATCG GCAGCCCCGA CCCCTATTCG GCGCATATCG ACGGCATGGG CGGCGCCACC
TCGAGCACCT CCAAGTGCGT GATCCTGTCG AAAAGCAGCC AGCCCGAGCA CGACGTCGAT
TACCTCTACG GCCAGGTGTC CATCGACAAG GCTTTCGTCG ACTGGAGCGG CAACTGCGGC
AACCTGTCCA CGGCGGCTGG CGCCTTCGCC ATCCATGCCG GCCTGGTCGA TCCCGCGCGG
ATTCCCGAGA ACGGCACCTG CGTGGTGCGC ATCTGGCAGG CCAATATCCA GAAAACCATC
ATCGCCCATG TGCCGGTCAT TGATGGCCAG GTGCAGGAAA CCGGTGACTT CGAGCTGGAC
GGGGTGACCT TCCCGGCGGC GGAGATCGTG CTGGAATTCC TCGACCCGTC CGACGACGGC
GAGGAGGGCG GCTCCATGTT CCCCACCGGC AACCTGGTCG ATGACTTGGA AGTGCCCGGT
ATCGGCAGCT TCAAGGCGAC CATGATCACC GCCGGCATCC CGACCGTGTT CGTCAATGCC
GAGGACATCG GCTATCGGGG CACCGAGCTG CGCGAGGATA TCAATGGCGA TCCGGCGCAA
CTGGCGCGCT TCGAGCAGAT CCGCATCGCT GGTGCGCTGC GCATGGGGCT GATCAAGACG
GCCGAGGAGG CTGCGACACG TCAGCACACC CCGAAGATCG CCTTCGTCAG TCCGCCCAAG
GACTACCGCA CCTCCAGTGG CAAGGCGGTG AAGGCCGGCG AGGTCGATCT GCTGGTGCGT
GCGCTGTCCA TGGGCAAGCT GCACCACGCG ATGATGGGCA CCTGCGCGGT GGCCATCGGC
ACGGCAGCGG CGATTCCCGG CACGCTGGTC AACCTGGCTG CCGGTGGCGG CGAGCGCGAG
GCGGTGCGTT TCGGCCATCC TTCCGGCACC CTGCGTGTCG GCGCGCAGGC CAAGCGGGTC
GATGGTCAGT GGACGGTGAC CAAGGCGGTG ATGAGCCGCA GTGCGCGCAT CCTGATGGAA
GGCTGGGTAC GCGTACCCGC TGAAAGCTTC TAG
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| Protein sequence | MILPGLHPGY FRTALMAHLP QVKIPATYIR GGTSKGVFFR LQDLPERCQV PGEARDKLFM
RVIGSPDPYS AHIDGMGGAT SSTSKCVILS KSSQPEHDVD YLYGQVSIDK AFVDWSGNCG
NLSTAAGAFA IHAGLVDPAR IPENGTCVVR IWQANIQKTI IAHVPVIDGQ VQETGDFELD
GVTFPAAEIV LEFLDPSDDG EEGGSMFPTG NLVDDLEVPG IGSFKATMIT AGIPTVFVNA
EDIGYRGTEL REDINGDPAQ LARFEQIRIA GALRMGLIKT AEEAATRQHT PKIAFVSPPK
DYRTSSGKAV KAGEVDLLVR ALSMGKLHHA MMGTCAVAIG TAAAIPGTLV NLAAGGGERE
AVRFGHPSGT LRVGAQAKRV DGQWTVTKAV MSRSARILME GWVRVPAESF
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