Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2060 |
Symbol | |
ID | 5109794 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2279579 |
End bp | 2281426 |
Gene Length | 1848 bp |
Protein Length | 615 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640503304 |
Product | extracellular solute-binding protein |
Protein accession | YP_001187553 |
Protein GI | 146307088 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.163136 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.391933 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCACC CGCTGCGCAG TATCCTGCTC CACGGTAGCA GCCTCATCCT GCTCGGCCTG GCCGGCCTCG CCCTCGCCGC CCCCAAGCAC GCCGCCACCC TCTATGATGA ACCGCCGAAG TATCCCGCCG ACTTCCAGCA CTTCGAATAC GCCAACCCCG ATGCACCGAA AGGTGGCATT TTCCGCCAGG CCGGCTTCGG CAGCTTCGAC AGCCTCAACC CCTTCATCAG CAAGGGCGTG TCCGCTACCG ACATCGGCCT GATCTACGAC ACCCTCACCG TGCAGAGCCT GGACGAACCC TTCACCAGCT ATGGCCTGCT CGCCGAGAAG ATCGAGAAGG CACCGGACAA CGCCTGGGTG CGTTTCCTGC TGCGCAAGGA AGCGCGCTTT CACGATGGCG AGCCCGTCAC CGCCGAGGAC GTCAAGTTCA CCTTCGACAT CCTGATGGAG AAAGGCGCGC CCATGTACCG CGGCTACTAC GCCGACGTCG AGCGCGTCGA GGTGGAGTCG CCGCACAGCG TGCGCTTCAT CTTCAGGCAC GCCGGCAACC GCGAATTGCC CCTGATCGTC GGCCAGCTGC CAGTGCTGCC CAAGCACTGG TGGGCCGAAC GCGACTTCAG CCGCAGCAAT CTGGAAGTGC CGCTGGGCAG CGGTCCCTAC CGAGTCGGCC GCGTGCAGGC CGGGCGCAGC ATCCGCTATG AGCGCGTCAA GGACTGGTGG GCCAAGGACC TGCCCGTGAG CCGCGGTTTC TACAACTTCG ACCAGATGCA GGTCGATTAC TACCGCGACA ACACCGTGGC CCTGGAAGCG CTCAAGGCCG GGCAGTTCGA TTACTGGCTG GAAACCAGTG CGAAGAACTG GGCGACTGCC TACAGCATCC CCGCCGTCGC CAACGGTCAG CTGATCAAGG AAGAGATCCA GAATCGCAAC CCGACCGGCA TGCAGGGCTT CATCTTCAAC ACCCGCCGCC CGCAGTTCCA GGACCGCCGC GTACGCGAGG CCCTGGGCCT GCTGTTCGAC TTCGAATGGG CCAACAAGCG CCTGTTCAAC GGCGCCTACA TTCGCACCCG CAGCTATTTC GACAACTCTG AACTGGGCTC GCAGGGCCTG CCCGGTGAAG ACGAGCTGGC GATTCTCGAG CCGCTACGGG GCAAGATTCC GGCCGAAGTG TTCAGCGAAG AGTTCCGCGT ACCGGTCACC GACGGCAGCG GCATCATCCG CGAACAGCAG CGCCGCGCCT ATCAGCTTTT GCAGCAGGCC GGCTGGCGCA TCGAGGGCGA CCGCATGCTC GACGCAGGCG GCCAGCCGGT GAGCTTCGAG TTCCTCCTGG CGCAGACCGA GTTCGAGCGC GTTCTGCTGC CATTCAAGCG CAACCTGGCC GACCTCGGCA TGGAGCTGGT GATTCGCCGC GTCGACGTCT CGCAGTACAT CAACCGTCTG CGCTCGCGCG ACTTCGACAT GATCGTCGGC GGCTTCGGTC AATCCAACTC GCCGGGTAAC GAGCAGCGCG AATACTGGCA CTCCTCCAGC GCCGACAATC CCGGCAGCCG CAACTACATC GGCCTCAAGG ACCCGGCCAT CGACCAGCTC GTCGAAGGTC TGATCAACGC CGATTCGCGG CAAAGCCTGA TCGCCCATAC CCGCGCCCTC GACCGTGTCC TGCTGTGGGG CCATTACGTG ATCCCCAACT GGCACATCAA GACCTGGCGC GTCGCCTACT GGAACCGCTT CGAGCATCCC AAGGTAACGC CGCTGTACGA CATCGGCCTG CACACCTGGT GGGTACGCCC GGGCCTCGAG CAGCCCAGCG CAGCGCAGCG GCAAGCGGCC GAACAGGCGG AGCAATAA
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Protein sequence | MIHPLRSILL HGSSLILLGL AGLALAAPKH AATLYDEPPK YPADFQHFEY ANPDAPKGGI FRQAGFGSFD SLNPFISKGV SATDIGLIYD TLTVQSLDEP FTSYGLLAEK IEKAPDNAWV RFLLRKEARF HDGEPVTAED VKFTFDILME KGAPMYRGYY ADVERVEVES PHSVRFIFRH AGNRELPLIV GQLPVLPKHW WAERDFSRSN LEVPLGSGPY RVGRVQAGRS IRYERVKDWW AKDLPVSRGF YNFDQMQVDY YRDNTVALEA LKAGQFDYWL ETSAKNWATA YSIPAVANGQ LIKEEIQNRN PTGMQGFIFN TRRPQFQDRR VREALGLLFD FEWANKRLFN GAYIRTRSYF DNSELGSQGL PGEDELAILE PLRGKIPAEV FSEEFRVPVT DGSGIIREQQ RRAYQLLQQA GWRIEGDRML DAGGQPVSFE FLLAQTEFER VLLPFKRNLA DLGMELVIRR VDVSQYINRL RSRDFDMIVG GFGQSNSPGN EQREYWHSSS ADNPGSRNYI GLKDPAIDQL VEGLINADSR QSLIAHTRAL DRVLLWGHYV IPNWHIKTWR VAYWNRFEHP KVTPLYDIGL HTWWVRPGLE QPSAAQRQAA EQAEQ
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