| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2027 |
|---|
| Symbol | |
|---|
| ID | 5109918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 2238929 |
|---|
| End bp | 2239756 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640503268 |
|---|
| Product | amino acid ABC transporter periplasmic protein |
|---|
| Protein accession | YP_001187520 |
|---|
| Protein GI | 146307055 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.360228 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTGAAG CTTGCGCAAC GTCAAGCCGC ACCGCCGCCG TGGCGGCTTA TACTCAAGCA
CGATCGTGCC GCTGGAAGCT CGCCGTGCCG TTACGTCAAT TCTGTTGTTG CGCTCTGCTC
TGCCTGGCCT TTGCCAGTCA GGCGGAAGAC GTCATCGAGC TGTACATGCC CAACGCGCCA
CCTCTGACCT TCGCCAGTTT GAAAGGCGGT CATGGCATGG TCGGCGATGT GACGCTCGCC
GCTCTGGCCC GCGCCGGCCT GCTCAGCGAA CTGCGCTACG AGCCCTGGGC ACGCGCCCAG
CGCAAGGTGG CCAACGGCCG CGACCAGCTG ATCATTCCCC TGTCGCGTAC CCCCGAACGC
GAGCCGCTGT ACACCTGGAT AGCACCCATC ATGCCGCTGG AGCGCGCCTT CTTCAGCCTC
GACGAGCCAG TGCAGAGCTT CGCCGAAGCG CGCCAGCGCT ACCGGCGCAT CGGCGTCGGC
CTGGGCACGG CGCAGGTGGA GATTCTCAGA AGCCAGGGTT TCAGCGAGCA GCAGATCATC
ACCCATACGC TGGGTGAAAA CCCCGCCCAT CTGCTGGAGC GGGGGCGTAT CGACGCCTGG
TTCACCGGCG TGCCGGAGGC GCTCTACATA TGGCCGCAAC ACTCCACGCG CAGGCTGCAG
ATGAGCCCGG TACTGGCCAG CACCAATCTC TATCTGGCCT GTTCGAAGGA GTGCGATGCG
CAACTGGTGC AGAAACTGCG TGCCGCCGTG CAAAGCGTGC ATGACGAAGG CATCAGCAAG
CGCCTGATCG AGCTCTATCT GCCGCAGCCA CTCGACGCCG CGCCCTAG
|
|---|
| Protein sequence | MSEACATSSR TAAVAAYTQA RSCRWKLAVP LRQFCCCALL CLAFASQAED VIELYMPNAP
PLTFASLKGG HGMVGDVTLA ALARAGLLSE LRYEPWARAQ RKVANGRDQL IIPLSRTPER
EPLYTWIAPI MPLERAFFSL DEPVQSFAEA RQRYRRIGVG LGTAQVEILR SQGFSEQQII
THTLGENPAH LLERGRIDAW FTGVPEALYI WPQHSTRRLQ MSPVLASTNL YLACSKECDA
QLVQKLRAAV QSVHDEGISK RLIELYLPQP LDAAP
|
|---|
| |