Gene Pmen_1993 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1993 
Symbol 
ID5109884 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2203279 
End bp2203587 
Gene Length309 bp 
Protein Length102 aa 
Translation table11 
GC content59% 
IMG OID640503234 
Productpeptidase 
Protein accessionYP_001187486 
Protein GI146307021 
COG category[S] Function unknown 
COG ID[COG3212] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.872282 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.14577 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGAT TGATCAGCCT TGCGACACTT GTCACCCTTG CCGGTGTGGT TACCATTGCC 
CAGGCCCGCG ACCTTGGCCC GGACGAAGCA AAGCGTCTGC AGGATGCCGG CACCATCAAA
TCTTTCGAGC AGCTCGATGA AGCGATCCTT GCCCAGCACC CTGGCGCGCG TATCGAGGAA
ACCGAGCTTG AAGATGAATA CGGCCGCTAC ATCTACCAGG TGGACCTGCG AGATGCACAG
GGGCAACAGT GGGACCTGGA GCTGGACGCC AGCACCGGGG AAATTCTCAA GAACCACCAG
GACGATTGA
 
Protein sequence
MNRLISLATL VTLAGVVTIA QARDLGPDEA KRLQDAGTIK SFEQLDEAIL AQHPGARIEE 
TELEDEYGRY IYQVDLRDAQ GQQWDLELDA STGEILKNHQ DD