| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1815 |
|---|
| Symbol | |
|---|
| ID | 5109945 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2003171 |
|---|
| End bp | 2005249 |
|---|
| Gene Length | 2079 bp |
|---|
| Protein Length | 692 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640503047 |
|---|
| Product | peptidoglycan-binding LysM |
|---|
| Protein accession | YP_001187311 |
|---|
| Protein GI | 146306846 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGGGTT TGGCGTCGGG TTCTGCGCTC TATTCGGGCA TGGCGCCGGC GCTCGGGTTG
GGTGAGATCA CCCTGCATTC GGCGTTGAAT CAGCCTTTCG AAGCCGAGAT CGAGTTGCTT
GAGGTCGGCG ATCTCGGTGC GCAGGATCTG CGCGTGGGGC TGGCACCGGC CGAAGTCTTC
AGTCGCTCGG GTGTCGAGCG CTTCTATTTT CTCAACGACC TGCGTTTCAC GCCGTTGCTG
CGCGGCACGC GCAGCGTGAT CCGGGTGGTT TCCAGTCGCC CGGTACGTGA GCCCTATCTG
AATTTCATCG TCGAAGTGGC GCGCCCGGGG GGTCAGCTGC TGCGCGAGTA CACCGTGCTG
CTCGATCCGC CGGGCTCGTC TGCCTACACC GCCGTGGCGG CCTCCAACGC AGCGGCGCCC
ACGCAGTCAA GCAGTGCTGC AGCGCCGGCT GCTGCCCCGA TCAGAAGCGT CGCTGCCCCC
AGCGCTGCGC AAGGGCATCG CCATCAGGTG GTTCGTGGCG ACAGCCTGTG GTCGATTGCG
GCTCGACTCC GCGAGCAGGG CAGTACGCTG TCGCAGCAGG CGCTGATGGA GGGCATCCTC
GCCCTCAATC CGAGCGCCTT CGCAGGAGGC GATCCCAGCC GCCTGCAGGC CGGCGCACAG
CTGTTGCTGC CCGATGCCGC CCGTGCGAGC GCAGCAGCCC CGGTTGCTGC CCAAGCCCCT
GCCGCGGCGG AGCCGGTGGT CGAGCCTGCA AATGCACCGC TGGCGGCGCA GGAGTCGGCT
CCAGAACAGA CGGAAAGCCT GCAGCAGTTG CTCGAGAGAC AGCGCCAGGT CGATCTGGAA
CTGGCCAACC AGGCCGCCGA GAACCTGCAG CTGCAGCAGG GCCTGGCGCA ACTGCAACTG
CAGCTGCAGC AACTGCAGGA ACAACTGGTA CAGAAGGACG CGCAACTGGC CGAGCTGACG
CAGCAGAGCA GCGCCGCCGC AGCACCGGCG CAACCGCCTG CTGTCGTCAC CGAACCCGTT
TCGCAGCCCG CGGCCGCCGA GCGTAGCGGA TTCTCCCTGT TGCTGGCCGG GGGCGCGGCG
TTGTTGCTGT TGTTGCTCGG CGCCATGCTC TGGGCCGCGC GCCGACGCGA CAGGGCCGGG
CCGGTGGTTC AGGTGCAGCC CAAGGCGCAG CGACAGGCCC CGGCACCCCA GGCGCGGGCC
GCGGCCGTTG CGACGCCTGA GCCGGAGTCG GAACCTGAGC CGGTGGCGAT GGTTGCGCCT
GTTGCCAGGC CGGCGCCCGC TGTGCAGCGG GCGCCGGGCC CGGTCGATCC GCTGGAGGCG
GCCAATGTCT ACATTGCCTA TGGCCGCATC AACGAGGCGC GTGGCGAGCT GAGCAAGGCG
CTGACCCTGG AGCCGCAGCG CAGCGATCTG CGTTTTCGCC TGCTGGAGGT GCTGGCGCAG
CTCGGCGATG GCGCAGGCTT TGCCCGCGAG GAGGCCGTGC TGCGTGCCGA AGGTTTCGAC
GAGGCGCGCA TCGATGCGCT CAAGGCTCGC CATCCCGGCT TGCACCATGC GGAGCCTTTC
CAGGCCAGCG AGCCCGAGGT GCAGCAGCCA CTGGCCCAGG CGCAGCCCGT TGCCGAGCCC
GATTTCCAGC TCAACCTCGA CGACCTGTCG CTGGATGCCG ACTGGGACCT GGTCAGCCCG
TTCCCTGCGG CGCGCAGCAA GCCCAAGGCC GCTGCCCAGC CCGAGTTCGA TCCGTCTTTC
TCCAGCAATC TGCAGGAGTT GCCGGAGGTG TTCGAGATGC CCGACGAAGG CGGTGGTCTC
AGCGCCTTCG GCGAGATGGA GATGGTGCTC ACGGATGAGG CGTTGGACGA CAACTTCCTC
GACGCCTTCG CCGGTGAAGC CGATGCCACC GCGGCCCTGC AGGGCGACAT CGACCAGTTG
GCGGGCAATC CCGAGCACAT GGCCAAGCTC AACCAGGCTC TGGCCTACAT CCAGCAGGGC
GATCTGGCCA CTGCCTGCGA CATCCTCAAC GAAGTGATCG ATCAGGGTGA TGACGAGCAG
AAGCGGGCCG CGCGCCAGCT CCTGGCAGAA ATCGCCTGA
|
|---|
| Protein sequence | MLGLASGSAL YSGMAPALGL GEITLHSALN QPFEAEIELL EVGDLGAQDL RVGLAPAEVF
SRSGVERFYF LNDLRFTPLL RGTRSVIRVV SSRPVREPYL NFIVEVARPG GQLLREYTVL
LDPPGSSAYT AVAASNAAAP TQSSSAAAPA AAPIRSVAAP SAAQGHRHQV VRGDSLWSIA
ARLREQGSTL SQQALMEGIL ALNPSAFAGG DPSRLQAGAQ LLLPDAARAS AAAPVAAQAP
AAAEPVVEPA NAPLAAQESA PEQTESLQQL LERQRQVDLE LANQAAENLQ LQQGLAQLQL
QLQQLQEQLV QKDAQLAELT QQSSAAAAPA QPPAVVTEPV SQPAAAERSG FSLLLAGGAA
LLLLLLGAML WAARRRDRAG PVVQVQPKAQ RQAPAPQARA AAVATPEPES EPEPVAMVAP
VARPAPAVQR APGPVDPLEA ANVYIAYGRI NEARGELSKA LTLEPQRSDL RFRLLEVLAQ
LGDGAGFARE EAVLRAEGFD EARIDALKAR HPGLHHAEPF QASEPEVQQP LAQAQPVAEP
DFQLNLDDLS LDADWDLVSP FPAARSKPKA AAQPEFDPSF SSNLQELPEV FEMPDEGGGL
SAFGEMEMVL TDEALDDNFL DAFAGEADAT AALQGDIDQL AGNPEHMAKL NQALAYIQQG
DLATACDILN EVIDQGDDEQ KRAARQLLAE IA
|
|---|
| |