| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1723 |
|---|
| Symbol | |
|---|
| ID | 5109303 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1897589 |
|---|
| End bp | 1898752 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640502954 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001187219 |
|---|
| Protein GI | 146306754 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0429936 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.192279 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGC CAAGTGAAAA AGCCGCTCGC CTGATCGAGG GCATCAACGC CTTCGTCCGC
GACGAACTCG ACCCGCTCGC CAAGCGCGAA GGCATCGTCT GGGGCGAGCC GGTGGCCAAG
TCGCTGCTAC GCGATATCTG GAGCCGCTCC TGCGAGCTGG GTTTCTACAA CGCCATGCTG
CCGCACGCCC TGGGTGGCGC CGGCCTGGGC GTCGCCGACC TGTGCGCACT GAAGGAGGCG
GCGGTGCTCA CCGGCTCGCC GCTGGCACCG CACATCCTCG GCGAGCTGTC CGGTCCACCA
CGGGTCGGCC ACCTGTTCAA GGTCGCCAAC CAGCATCAGG TGGAAACCTT CCTGGGGCCG
ATCTGCCGCG CCGAGAAGGC GGTGTGCTTC GCTCTCACCG AGGCCGAGGC CGGCTCGGAC
GCCACCGCCA TCGGCACCGA GGCGCGCCTG GAGGGCGAGC ACTACGTGCT CAATGGCGCC
AAGCGCTACA TCTCCGGCGC GCCCTATGCC GACCTCGCCG TGCTGCTCGC GGTCACCGGT
CCGGGCCGCG GCCCGCAAGG CATCTCGGCG TTTTTCATCG ACCTGCACGC CGAGGGCGTG
AGCATCGACA TCGACTATTC GGTGATGTCC GGCGGCGGCG CGCATGGCAA CATCCTGCTC
AGGGACGTGC GCGTGCCGGT GGCGAACCGC ATCGGCGAAG AAGGCGCCGG CTTCAAATTG
GCCATGGGGC GTATCACCCT CAATCGCCTG CTGCATTGCC CGACCATGCT CGGCATGGCC
GGCCTGGCGC TGAACCTGTC GCTGGACTAT GCGCGCACGC GCAAGCAGTT CGGCCAGCCG
ATCGCCATGT TCCAGTCGAT CAACCATATG CTCGCCGACA TGGCCACCGA GCTGTACGCC
GCGCGCAGCA TGATGTACGC CACGGCAGCG CACAACGACG CCGGCGGCGA CATCAAGGTG
CAGGCGCCGA TGTGCAAGCT GTACGCCTCG GAAACCGCCT TCCGCATCGC TGACAGAGCG
GTGCAGATCC ATGGCGGCGC CGGCCTGATC AAGGGCCATC CGGTCGAGTG GATATTCCGC
GCGAGCCGAA TGATGCGCAT CCTGACAGGC ACCAGCGAGA TTCAGCGCAA CACCATCGCC
AAGGGCATCC TGATGCCCGG CTAG
|
|---|
| Protein sequence | MIKPSEKAAR LIEGINAFVR DELDPLAKRE GIVWGEPVAK SLLRDIWSRS CELGFYNAML
PHALGGAGLG VADLCALKEA AVLTGSPLAP HILGELSGPP RVGHLFKVAN QHQVETFLGP
ICRAEKAVCF ALTEAEAGSD ATAIGTEARL EGEHYVLNGA KRYISGAPYA DLAVLLAVTG
PGRGPQGISA FFIDLHAEGV SIDIDYSVMS GGGAHGNILL RDVRVPVANR IGEEGAGFKL
AMGRITLNRL LHCPTMLGMA GLALNLSLDY ARTRKQFGQP IAMFQSINHM LADMATELYA
ARSMMYATAA HNDAGGDIKV QAPMCKLYAS ETAFRIADRA VQIHGGAGLI KGHPVEWIFR
ASRMMRILTG TSEIQRNTIA KGILMPG
|
|---|
| |