| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1707 |
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| Symbol | |
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| ID | 5109681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1876209 |
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| End bp | 1876919 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502936 |
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| Product | RNA-binding S4 domain-containing protein |
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| Protein accession | YP_001187203 |
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| Protein GI | 146306738 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.067954 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAGC CCACACGCCT GTCCAAACGC GTCATCGAAC TGCTGGGCTG CTCGCGGCGC
GAAGCCGACC TGTACATCAC CGGCGGCTGG ATCAGCGTCG ATGGCCAGGT GGTCGAGGCA
CCGCAGTTCA AGGTTGGCGA CCAGCGCGTC GAACTGCTGC CAGGCGCCAA CCTCGAGCCG
GTGGAGCCGG TCACCCTGCT GGTGCATTGC CCGACCGGCA CCAGCGCGGC GCAGTTGCAG
CATCTGCTGG TGCACGAGCG ACACTGGGAA GAGGACCCGC ACGCCCGGCG TGTCCTGCAT
GGACACTTCC TGCGCCAGGA GCAAAGCCTG CCGTTGCAGA ACGGTGCCAG CGGTCTGGTG
GTGCTCAGCC AGGACTGGCG CGCGCAACGC AAGCTGCGCG AAGACGGTGC CAAGCTGGAG
CAGGAATATC TGGTCGATGT CGCCGGCGAG CTGCCGGCCA GCGCCCTGGA GCGCTTGAAG
AAAGGCCTTG TGCACAAGGG CACGCAGTTT CCGCCGTGCA AGGCCAGCTG GCAGAGCGAA
CAGCGCCTGC GCTTTGCCCT GAAGAATCCG GCACCCGACC TGCTGCGGCA GATCTGCGCG
GCGCTGGGCC TGAAGGTGCT GGGCATGAAG CGCATCCGTA TCGGCGGTGT GCCCATGGCC
AAGCTGCCGG TCGGGCAATG GCGCTATCTG GGTGACAAGG AACGATTCTG A
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| Protein sequence | MSEPTRLSKR VIELLGCSRR EADLYITGGW ISVDGQVVEA PQFKVGDQRV ELLPGANLEP
VEPVTLLVHC PTGTSAAQLQ HLLVHERHWE EDPHARRVLH GHFLRQEQSL PLQNGASGLV
VLSQDWRAQR KLREDGAKLE QEYLVDVAGE LPASALERLK KGLVHKGTQF PPCKASWQSE
QRLRFALKNP APDLLRQICA ALGLKVLGMK RIRIGGVPMA KLPVGQWRYL GDKERF
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