| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1560 |
|---|
| Symbol | |
|---|
| ID | 5109218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1718850 |
|---|
| End bp | 1720409 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640502788 |
|---|
| Product | carbohydrate kinase, FGGY |
|---|
| Protein accession | YP_001187056 |
|---|
| Protein GI | 146306591 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1070] Sugar (pentulose and hexulose) kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.117434 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCGAAC CAAGCTACCT GCTGAGCATC GACAACGGCA CCCAGAGCGT GCGTGCGCTG
CTGTTCGATA CCCAGGGCAA CCTGCTGGCC AAGGGCAAGG TGGAGCTGGA TCCCTATTTC
TCCAGCCAGC CGGGCTGGGC CGAGCAGGAC CCGGAATACT ACTGGGCCAG CCTCGGCGAG
GCCTGCCGGC TGCTGTGGCA GCAGGTGGAC ATCGACCGCA GTCTGATCCG CGGCGTCGCC
GTCACCACCC AGCGTGGCAG CATCATCCAT GTCGACGAGC AGGGTACGCC GCTGCGCCCG
GCGATTCTCT GGCTCGACCA GCGCCGCGCC GAGGTGCAGG GACGGATCAA GGGCCCCTGG
GGCTGGCTGT TCAAGCTGGC GCGGGCCGAG GAGGCGGTGG ATCACTTCCG CGCCCAGGCC
GAGGTCAACT GGGTGGCTCA GCATCAGCCT GACATCGCGG ATCGCACGCA CAAGGTACTG
CTGCTGTCCG GGTTTCTCAC CCAGCGCCTG TGCGGCCGTT TCGTCGATTC CACCAGCAGC
TGCGTGGCCT ACCTGCCGTT CGACTACAAG CGCCTGCGCT GGGCGGCGCC GGGCGACTGG
AAATGGCAGG CGCTGAAGGT GCGCCCCGAG CAGCTGCCCG AGTTGTTCAA GCCGGGCGAG
CGACTGGGCA GCATCACGGC CTCCGCCAGC CGTCATACCG GTATTCCCGA GGGCCTGCCG
CTGATCGCCG CCGGCGCCGA CAAGGCCTGC GAGGTATTGG GTTCCGGCGC GCTGGACGCC
GGCACCGCGT GCCTGTCCTA CGGCACCACC GCGACCATCA ACACCATACG CAGCCGCTAT
CTGGAAACCA TCCCGCTGAT CCCACCGTAC CCGGCAGCGC TGCCGGATCA CTTCAATACC
GAGGTGATGA TCTACCGCGG CTTCTGGATG GTCAGCTGGT TCAAGCGCGA ATTCGGCCTG
CGCGAGATGC AACGTGCCGA GGCACTGGGC GTGCCGCCCG AGGCGCTGTT CGACGAGCTG
GTCAACGCCG TGCCGCCCGG CTCCATGGGC CTGATGCTGC AGCCGTACTG GACGCCGGGC
ATCCGCGAGC CGGGCCTGGA GGCCAAGGGT TCGATCATCG GCTTTGGCGA TGTGCATACC
CGCGCGCATC TGTATCGGGC GATTCTGGAG GGATTGGCCT ACGCCCTGCG CCAGGGCAAG
GAGCGCATCG AGAAACGCGC CGGCACCCGT ATCGAGCGCC TGCGCGTGTC CGGTGGCGGT
TCGCAGAGCG ATGCGGCGAT GCAGCTGACC GCCGACATCT TCGGCCTGCC GGCCGAACGC
CCGCACCTGT ACGAGACCAG CGGCCTGGGC GCGGCGATCA ACTGTGCAGT AGGCCTGGGG
CTGCACGCCG ATTACCCGAG CGCCATCGCC GCCATGACCC GCGTTGGTCA GGTATTCCAG
CCGAACCCGG AGGCCCAGCG CGTTTACCAG CAGCTCTACG GGCAGGTCTA TCAGCGCATG
TATCGTCAGC TCAAGCCGCT GTACCAGCGC ATTCGCAAGA TCACCGGCTA TCCGGCGTGA
|
|---|
| Protein sequence | MSEPSYLLSI DNGTQSVRAL LFDTQGNLLA KGKVELDPYF SSQPGWAEQD PEYYWASLGE
ACRLLWQQVD IDRSLIRGVA VTTQRGSIIH VDEQGTPLRP AILWLDQRRA EVQGRIKGPW
GWLFKLARAE EAVDHFRAQA EVNWVAQHQP DIADRTHKVL LLSGFLTQRL CGRFVDSTSS
CVAYLPFDYK RLRWAAPGDW KWQALKVRPE QLPELFKPGE RLGSITASAS RHTGIPEGLP
LIAAGADKAC EVLGSGALDA GTACLSYGTT ATINTIRSRY LETIPLIPPY PAALPDHFNT
EVMIYRGFWM VSWFKREFGL REMQRAEALG VPPEALFDEL VNAVPPGSMG LMLQPYWTPG
IREPGLEAKG SIIGFGDVHT RAHLYRAILE GLAYALRQGK ERIEKRAGTR IERLRVSGGG
SQSDAAMQLT ADIFGLPAER PHLYETSGLG AAINCAVGLG LHADYPSAIA AMTRVGQVFQ
PNPEAQRVYQ QLYGQVYQRM YRQLKPLYQR IRKITGYPA
|
|---|
| |