| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1559 |
|---|
| Symbol | |
|---|
| ID | 5109217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1717233 |
|---|
| End bp | 1718804 |
|---|
| Gene Length | 1572 bp |
|---|
| Protein Length | 523 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640502787 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001187055 |
|---|
| Protein GI | 146306590 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.0878592 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGT GGAACGCCCG CTGGCGCGAG CGTGCGCTGC CCGAGCTGGC CGCGCACGAC
TGGGACTTGC TGGTGATCGG CGGCGGCATC TGCGGCGCCG GCATCCTGCG GGAGGCGGCG
CGACGCGGCT GGCGCTGCCT GCTGCTGGAG CAGCGCGACT TCGCCTGGGG CACCTCCAGT
CGCTCGTCGA AGATGGTGCA CGGTGGCCTG CGCTACGTCG CCAAGGGCCA GCTGGGGCTG
ACCCGCGACT CGGTGCGCGA GCGCCAGCGC CTGCTCGGCG AGGCGCCGGG GCTGGTGGAG
CCGCTGAGTT TCGTTATGCC GCACTACCGC GGCGGCTTCC CTGGGCCCAA AGTCTTCGGC
GGCCTGCTGA GCCTGTACGA CGCCCTGGCC GGCAAGCGCA ATCATCTGTT CTACCCGCTG
CAGCAGCTGC GTTACCTGGC GCCGGGCATC CGCGAGGACG GCCTGCTCGG CGGCACGCGC
TTCTTCGACG CGGTGACCGA CGATGCCCGC CTGGTGCAGC GCGTGCTGGG CGAAGCACGC
GCCGAAGGTG CAGAGGCGCT CAATGGCATG CGTGTGGTCG AGTTGCTGCG CGAGGCAGGG
CAGGTGGTCG GCGTACTGGC CGAGGATATC GAGACGGGCA ACCGCTACCG CCTGCGTAGC
CGCGCCGTGG CCCAGGCCAC CGGCGCCTGG GCCGATCGCC TGCGCCAGCC CGGCAATGGT
CGCATCCGTC CGCTGCGCGG CAGCCATCTG CTGCTGCCGG GCTGGCGCCT GCCGGTGGCG
CATGCCTTCA GCTTTATGCA CGCGGCCGAT GGTCGGCCGG TATTCGTCTT CCCCTGGGAG
GGCGCGACGG TGATCGGCAC CACCGATCTG GATCATGCGG ACGATTTGGA CACCGAGGCG
GCGATCAGTA ACGGGGAGGT CGACTATCTG CTGGCCGCCT GTGCCCAGCA GTTCCCGACC
GCCGAAGTGA CCCGCGGCGA TGTGCTGTCG ACCTGGGCCG GCGTGCGCCC GGTGGTGGGC
GATGGCAGCG CCGGGCTGAA ACCCTCGGAC GAGAAGCGCG AACACGCGCT ATGGATCGAG
CCGGGCAGCG TGACCCTGGC CGGCGGCAAG CTGACCACCT TTCGCCTGCT GGCGCTGGAG
GTACTGCGCG CCTGCGCGGG TTTCGTCGGC AAAGCGGTGG ACGATCAGGG TGGCGCGGTC
TTCGCTTCGA GTATGCCGAC GCCAATGCCG GCATTGACTC CGGCGCAGCA ACGCCGTCTG
GCCGGCCGGC ATGGCCGCCA GCTGGGCGAG GTAGTGCGCC TGATCGACGA GGTGGGCGGC
GATTGCGTCG CGGGTACAAA CACCCTGTGG GCCGAGCTGG CCTGGGCCGC CGAGGGCGAG
CTGGTGCTGC ACCTGGACGA CCTGCTGCTG CGCCGCACCC GCCTGGGCCT GCTGCTGGCA
GAAGGCGGTC GCGCCGAACT GCCGCGCATC CGCGCGCTGT GCCAGCCGCG CCTGGGTTGG
AGCGATGCGC GCTGGCAGCA GGAAGAAACC AACTACCTGG CGCTATGGCA ACGCTGTTAC
AGCCTGCCGT AG
|
|---|
| Protein sequence | MELWNARWRE RALPELAAHD WDLLVIGGGI CGAGILREAA RRGWRCLLLE QRDFAWGTSS
RSSKMVHGGL RYVAKGQLGL TRDSVRERQR LLGEAPGLVE PLSFVMPHYR GGFPGPKVFG
GLLSLYDALA GKRNHLFYPL QQLRYLAPGI REDGLLGGTR FFDAVTDDAR LVQRVLGEAR
AEGAEALNGM RVVELLREAG QVVGVLAEDI ETGNRYRLRS RAVAQATGAW ADRLRQPGNG
RIRPLRGSHL LLPGWRLPVA HAFSFMHAAD GRPVFVFPWE GATVIGTTDL DHADDLDTEA
AISNGEVDYL LAACAQQFPT AEVTRGDVLS TWAGVRPVVG DGSAGLKPSD EKREHALWIE
PGSVTLAGGK LTTFRLLALE VLRACAGFVG KAVDDQGGAV FASSMPTPMP ALTPAQQRRL
AGRHGRQLGE VVRLIDEVGG DCVAGTNTLW AELAWAAEGE LVLHLDDLLL RRTRLGLLLA
EGGRAELPRI RALCQPRLGW SDARWQQEET NYLALWQRCY SLP
|
|---|
| |