| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1396 |
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| Symbol | |
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| ID | 5109449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1559686 |
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| End bp | 1560756 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640502625 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001186893 |
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| Protein GI | 146306428 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2203] FOG: GAF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.75781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACCG ATTCCCAAGC TCTGCGCCTC GTTCGTGTGG TTCAGGAGCT TTCCATGGCG
AAGGATGTGG ACCGCGTAGC GGAGATCGTC CGTAGCGCGG CCCGCGAGCT GACCGGTGCC
GACGGCGCCA CCTTCGTCCT GCGCGATGGG CTGCAATGCT TCTATCGCGA CGAGGACGCC
ATCTCGCCCC TGTGGAAGGG GCAGCGTTTC CCCTTGAGTG CCTGCATCAG TGGTTGGGCC
ATGCTCAACC GCAGCGCTAC CGTGATTCCC GACATCTACG CCGACCCGCG CATTCCCCAT
GAGGCGTATC GGCCGACCTT CGTCAAGAGC CTGGTCATGG TGCCGATCCG TACCCTGGAG
CCGATCGGCG CCATCGGTAC CTACTGGGCC GAGTACTGCC ACGCCACCGA CGAGCAGGTG
CAACTGCTGC AGGCGTTGGC CGACTCCACC TCGGTGGCTT TGGAGAACGT CCAGGTCTAC
GCCGAGCTGG AGCGCCGCGT CGAAGAGCGC ACGGCGCAGC TGGCCGAAGC CAATCGACGC
TTGCAGGAAG AGGTGCGGGA ACGCCAGCTG GCCGAGCAGG CAGTGCGCCA GCTGTCGCTG
ATCGACGACC TGACCGGCTT GTACAATCGT CGCGGCTTTC GCCTGCTGGC CGAGCGCGAG
CTGCGCGCGG CGCGGCGGCG CAAGGGGCGC TGCCTGCTGC TGTATGCCGA CCTCGATGAG
CTCAAGCCGG TCAATGATCG CTTCGGCCAC GGCGCCGGCG ATCGCTTGCT CAAGGCGGCG
GCCGACGTGC TCAAGGCGCA GTTCCGCAAC ACCGACGTGA TCGCCCGACT GGGCGGCGAC
GAATTCGTCG TGCTGGCCAG CGACTACAGC GACAGCGAAG AGGTGCTGCG GCGTCTGGAG
CAGGCATTGC GTGGCAGAGA GGGCGGTGCC GGGCAGCGTC TGTCGATGAG CATGGGGGTC
AGTGAGTCGT CGCTGAATCC TGACGAGGGG CTCGACAGCC TGCTGGTCCA GGCCGATGCG
GCGATGTACG CCAACAAGTG CGCGCGCCGG GCCTTGCGCG CGGTGAGCTG A
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| Protein sequence | MKTDSQALRL VRVVQELSMA KDVDRVAEIV RSAARELTGA DGATFVLRDG LQCFYRDEDA
ISPLWKGQRF PLSACISGWA MLNRSATVIP DIYADPRIPH EAYRPTFVKS LVMVPIRTLE
PIGAIGTYWA EYCHATDEQV QLLQALADST SVALENVQVY AELERRVEER TAQLAEANRR
LQEEVRERQL AEQAVRQLSL IDDLTGLYNR RGFRLLAERE LRAARRRKGR CLLLYADLDE
LKPVNDRFGH GAGDRLLKAA ADVLKAQFRN TDVIARLGGD EFVVLASDYS DSEEVLRRLE
QALRGREGGA GQRLSMSMGV SESSLNPDEG LDSLLVQADA AMYANKCARR ALRAVS
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