| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1378 |
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| Symbol | |
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| ID | 5109431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1544381 |
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| End bp | 1545262 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640502607 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001186875 |
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| Protein GI | 146306410 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.230612 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.324624 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCCTGC GGGTGGAAAC CTCCAACTGG CCGCTGCCAC TCGGCGGGCA GCGCTTCATC
ACGCCACCGC GCCTGCGCCG CCTGCTGGTA CGCCATCCGC TGAGCTCGGG CTGCTATCCC
CTGGCCATGG GTTTTTACCC TGACGCGGCC GGACACCAGA TGCGGCGCCT GCAGCCGGAC
GATCACCTGC TGATCTATTG CCGCTCCGGC AGGGGCTGGC TGGACGCGAC GGATGGACGA
TTCGAGGTTG CTGCTGGCGA TCTGCTGCTG CTGCCCAAGG ACGTGCCGCA TGCCTATGGC
GCCGATGGGC ACAGCCCCTG GACGATCTAT TGGGTGCACT TCGACGGCAG CCTAAGCGAA
GACTTCCTGC GTCTGCTGGG CGCGCAGACG CTGCGGCGCA TCGGTGTGCA GCCGCGTTTG
CTCGGCGACT TCGAGGCGCT GCTGGGTCTG CAGCGGCAGG GCCTCAACGC CTTGCCCTTC
ATCCATGCCG CGCACCGCCT GCAGGCGATG CTCAGCTCCC TGGCGGTGCT GCCGGCGCGG
GTCAGTCTGA AATCCGGGCG GGTGCTGGAT ATCGAAGCGG TGCAGGCGGT GATGCGCGCC
CACCTGCACG GCAACCTCAA CCTCGACGAA CTGGCGGCGC AGTTCAAGCT CTCGCGCTTT
CACTTCGCCA AGACCTACCG CGCGCTGACC GGCCATGCGC CGATCCAGGA CTTCATCCAG
CTGAAGATGG CGCTGGCCTG CCGTCTGCTC GACCGTGGCG ATATCGAGGT GCGTCAGGTC
GCCGAGCAGC TGGGTTACGA GGACCCCTAT TACTTCTCGC GGCTGTTTCG CAAGGTGGTG
GGCATGGCGC CCAGTCATTA CCGGGCGCTG CATCAGGGCT AG
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| Protein sequence | MGLRVETSNW PLPLGGQRFI TPPRLRRLLV RHPLSSGCYP LAMGFYPDAA GHQMRRLQPD
DHLLIYCRSG RGWLDATDGR FEVAAGDLLL LPKDVPHAYG ADGHSPWTIY WVHFDGSLSE
DFLRLLGAQT LRRIGVQPRL LGDFEALLGL QRQGLNALPF IHAAHRLQAM LSSLAVLPAR
VSLKSGRVLD IEAVQAVMRA HLHGNLNLDE LAAQFKLSRF HFAKTYRALT GHAPIQDFIQ
LKMALACRLL DRGDIEVRQV AEQLGYEDPY YFSRLFRKVV GMAPSHYRAL HQG
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