| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1285 |
|---|
| Symbol | |
|---|
| ID | 5109101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1445100 |
|---|
| End bp | 1447502 |
|---|
| Gene Length | 2403 bp |
|---|
| Protein Length | 800 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640502511 |
|---|
| Product | D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase |
|---|
| Protein accession | YP_001186782 |
|---|
| Protein GI | 146306317 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3957] Phosphoketolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGC TATTGCCCGA CGCCGCCGCC TTGCACCAGC ACGCTCAGCA ATATCCCGAC
TTCGCCCGCT GGCAAGCCGG CCACGGACCT ATCCAGCATA GCCCGCAGAC CTGCGCCGCA
GTCTTTCGGC TCGCTCATCA ATTGGTGCAG AGCGGCCTGC AGCCCGACCT GCCAAGCGTC
TATCGCCTGT TGTGCGCCCT CGATTCACTG ACGGCCGCCG GCCTCTGGCT GGTGGTGCAC
ATGACCTACG CGCAGCGCGT ACGGCTCGAT GGCCAGCCGC TGCAGGCCGG CGACTTCAAG
GACGTGCCCG AGGGGCATAC CGGCGGCGCG CTGAACATGG TGCCGGCCTA CGCCGGTTAC
CTGGCCCTCA ATGCCCTGAC CGCCGAGACG CGTGGCTGGC TGATGGGGCA GGGCCATTGC
GTGGCGGCGA TCGAGGCGTT GAACCTGCTG ACCGGCAATC AGCACCCCGA ACAGGCCGCC
CGCTACGCTC GCGACGAGGC GGGCATGAGT CGTCTGGCGG CGGATTTCTA CAGTTACGCC
CAGGCCGCTG ACGGCAGCCC AGGCGTGCCG CTGGGCAGTC ACGTCAACCC GCATACCGCC
GGCGGCATCG CCGAGGGCGG CTACCTGGGC TTTGCCGAGC TGCAGTACGC GCATCTGCCA
TTGCCGGGGG AGAAGCTGGT GGCCTTTCTC TCCGATGGTG CCGCCGAGGA GCAGCGCGGC
AGCGACTGGA TGCCGCGCTG GTGGCGCGCC GAGGATTGTG GCGTGGCGCT GCCGGTGATG
ATCGCCAATG GCCGGCGTAT CGAGCAGCGC ACCGAGCTGG GCACGCATGA GGGCCTCGAA
GGCTTTCGTC AGCACCTGCG GCTGTGCGGC TTCGATCCGC TGAGTTTCGA CGGGCGCGAC
CCGGCGGCCT TCGTCTGCGC CCTGTGGGAG ATGGAGCAAC GCCTGGCGCA CCGTGTCGGC
GAACTGAACG ACGAGATGCT CGCCTATCCC TTGCCGATGC CCTACGGCAT CGCCGAAACC
ACCAAGGGCT ATGGCTTTTT CGGCGCCGGC AGCAACGCCG CGCACAACCT GCCGCTGCCG
GCCAGCCCGG CGCGGGACGA GCAGGCGCGC GAGCTGTTCA ACCAGCATGC GGCGGCCTTG
TGGGTGGAGC CGCAGAAGTT GTCCGATGCC TGCGATCTGT TCGCCAGCCG CAAGGGGCGC
GCGCTGGAGC GGGACAACCC GCTGGCCTTG CGTCAGCCGC CGCAGCCCGT GCAGCCGCCG
CTGCAGTTTC ACGATCATGC CTGCTCGCCG ATGAGCGCCA TGGATCGCTA TTTCGTCGAC
CTGGTGCGCG CCAACCCGCA ACTGCGGCCG CGGGTGGGCA ACCCGGACGA ACTGGCCAGC
AACCGCCTGG GTGGCGTACT GGCAGAGCTC AGGCATCGCG TCAGCCAGCC GGAGAGCGAG
CTGGAGTCGG TGCACGGCGC GGTGATCACT GCGCTCAACG AGGAGGCCGT GGTATCCGCC
TGCCTGGCCA ACCAGGGCGG GCTCAATCTG GTGGCTAGCT ACGAAGCCTT CTGCGTGAAG
ATGCTCGGCG CCGTTCGTCA GAGCCTGATC TTCGCCCGCC AGCAGAAGGA GGCAGGGCGT
CCGGCCGGCT GGCTGGGCTG GCCGCTGGTG GCCACCTCGC ACACCTGGGA GAACGGCAAG
AACCAGCAAT CGCACCAGGA CACCACCTTC TGCGAGGCGC TGCTGGGTGA GATGCACGAC
GTCATGCGCG TGTTGCTGCC CGCCGATCAC AACTCGCTGC TGGCCCTGCT GCCGGAGATC
TACCAGACGC GTGGTCGACT GGCCTGCCTG GTGGCGGCCA AGCGTGAACG ACCCTGTTTC
TTCACGGTCG AACAGGCACA GCAGCTGGCG CGCGACGGTG TCCTGCAGGT CGCTGAAGGT
GGCGGCGGCG AGCCCGTGCT GCTGATCGCC AGTGGCAGCT ATCAGCTGAG CGAGATGCGC
CGCGCCGCCG TTCGTCTGAG TGAGCAGGGC GTGGCCTGGC GTCTGATTTA CTTGCAGGAA
CCGGGGCGTT TTCGGGCGCC GCGCGATGCC TGGGAGGCCG CCAGCGTGGC CAGCGCCGAG
CAGCGTGAAG CGCTGTTTCC GGCGGCGTGC CGCCGCCGCG TGCTGCTGAC GCACATGCGC
CCGGAGGTGG CCGCGGGCCA TCTTTGGCCG CTGCTGGGCG ACGCCGCCAG CTGTCGGGCG
TTGGGCTACC GCAACCGCGG CGGCACCTTC GACGAGGCCG GCATGCTGTT CGCCAATGGC
TGCAGTTGGG CGCATGTGCT GCAAAGCGTG GCCGAAGTGC TGGGCGTATC GCCCGATGGC
TGGTTGAGCG CTGAGGAACG CGCGGCTCTG GCAGGCAGGG GGGACCCTCG CTGTCTGCGT
TGA
|
|---|
| Protein sequence | MTQLLPDAAA LHQHAQQYPD FARWQAGHGP IQHSPQTCAA VFRLAHQLVQ SGLQPDLPSV
YRLLCALDSL TAAGLWLVVH MTYAQRVRLD GQPLQAGDFK DVPEGHTGGA LNMVPAYAGY
LALNALTAET RGWLMGQGHC VAAIEALNLL TGNQHPEQAA RYARDEAGMS RLAADFYSYA
QAADGSPGVP LGSHVNPHTA GGIAEGGYLG FAELQYAHLP LPGEKLVAFL SDGAAEEQRG
SDWMPRWWRA EDCGVALPVM IANGRRIEQR TELGTHEGLE GFRQHLRLCG FDPLSFDGRD
PAAFVCALWE MEQRLAHRVG ELNDEMLAYP LPMPYGIAET TKGYGFFGAG SNAAHNLPLP
ASPARDEQAR ELFNQHAAAL WVEPQKLSDA CDLFASRKGR ALERDNPLAL RQPPQPVQPP
LQFHDHACSP MSAMDRYFVD LVRANPQLRP RVGNPDELAS NRLGGVLAEL RHRVSQPESE
LESVHGAVIT ALNEEAVVSA CLANQGGLNL VASYEAFCVK MLGAVRQSLI FARQQKEAGR
PAGWLGWPLV ATSHTWENGK NQQSHQDTTF CEALLGEMHD VMRVLLPADH NSLLALLPEI
YQTRGRLACL VAAKRERPCF FTVEQAQQLA RDGVLQVAEG GGGEPVLLIA SGSYQLSEMR
RAAVRLSEQG VAWRLIYLQE PGRFRAPRDA WEAASVASAE QREALFPAAC RRRVLLTHMR
PEVAAGHLWP LLGDAASCRA LGYRNRGGTF DEAGMLFANG CSWAHVLQSV AEVLGVSPDG
WLSAEERAAL AGRGDPRCLR
|
|---|
| |