| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1259 |
|---|
| Symbol | |
|---|
| ID | 5109075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1421161 |
|---|
| End bp | 1421574 |
|---|
| Gene Length | 414 bp |
|---|
| Protein Length | 137 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640502484 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001186756 |
|---|
| Protein GI | 146306291 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.000497987 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGATTGA CCGCGTTGGA AGTGCAGACA CTGATTCGGG CCGGGTTGCC CATGGCCGAG
GATATCGACC TGCGTATCGA CCGGCTGGAC GAGGAGGGCG TGCTGGCACG GGTGCCCTTT
CATAGCAAGC TGGTGCGACC CGGTGGCACG CTGTCCGGCC CGACCATCAT GGCCCTCGGC
GATGCCGCCA TGTATGCCGT GGTACTGGGG CGTCTCGGTC GGGTGGAGAT GGCGGTGACG
TCCAATCTCA ATATCAACTT TCTGGTCAAG CCCCGGCCGG TGGACCTGCT GGCCGTGGCT
CGAATACTGC GTTTGAGCAG GCGTCAGGCG GTATGTGAAG TTTCGTTGTA TTCGGCGGGC
AATGAGAGTG AACTCGTCGC CCACGTAACG GGGACATATG CGTTGCCGAT TTGA
|
|---|
| Protein sequence | MGLTALEVQT LIRAGLPMAE DIDLRIDRLD EEGVLARVPF HSKLVRPGGT LSGPTIMALG
DAAMYAVVLG RLGRVEMAVT SNLNINFLVK PRPVDLLAVA RILRLSRRQA VCEVSLYSAG
NESELVAHVT GTYALPI
|
|---|
| |