| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1196 |
|---|
| Symbol | |
|---|
| ID | 5106561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1350012 |
|---|
| End bp | 1351613 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640502421 |
|---|
| Product | regulator of RNA terminal phosphate cyclase |
|---|
| Protein accession | YP_001186693 |
|---|
| Protein GI | 146306228 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG4650] Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.330253 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGCAA AGAAAACCGT CGCCATCGGC TTTATCGGCG CCACCCTGGA TCGGGTCGGC
AAGGGCGCCA ATCGCTGGAA AAAATGGCGG CCGAGCATCG GCCTGTGCCA GCAGGCTGAT
CTTTTGATCG ACCGGCTGGA GTTGATCCAC GGCACCGACG CGCGTGATAT CGGCCTGGCC
GAGCGCATCC GCGCCGATAT CGAGCAGATA TCCCCGGAAA CCGAGGTGCG CCTGCAGCCG
ATGCAGTTGC GCAACCCCTG GGATTTCGAG GAGGTGTATG GTGCGCTGCA CGATTTCACC
AGCGCCTATG CCTTCGATAC CGAACACGAG GACTATCTTG TGCATATCAC CACCGGTACG
CACGTGGCGC AGATCTGCTG GTTCCTGCTG ACCGAGGCGC GCTACCTGCC GGCACGGCTG
GTGCAGACCT CGCCGGCGCG CAAGCGCGAC GAGGCCGCGC AAGTGACCGG CACCTACACG
CTGATTGACC TGGATCTGTC ACGCTATGAC CGTATCGCCA CGCGCTTCAA GCACCAGCGC
CTGGAGGGTC TGGCCTTCCT CAAGTCCGGC ATCGCCACGC GCAACGCGGC GTTCAACCGG
TCCATCGAGC AGATCGAGCG GGTCGCCGTG CGTTCCTCGG CGCCCATGCT GCTGATCGGC
CCGACCGGTG CCGGCAAGTC GTTCCTGGCG CGGCGCGTAT ACGAGCTCAA GCGCAGCCGC
CACTTGGTCG ATGGCCGCTT CGTCGAGGTC AACTGCGCCA CGCTGCGCGG CGATGGCGCC
ATGTCGGCGC TGTTCGGCCA TATCAAGGGC GCGTTCACCG GCGCGCAGAA TGCCCGCGAC
GGTCTGTTGC GTGCCGCAGA TGGCGGCATG CTGTTTCTCG ACGAAATCGG CGAGCTGGGC
CTGGACGAGC AGGCCATGCT GCTCAAGGCC ATCGAGGAAA AACGCTTCTT CCCCCTGGGT
TCTGATAAGG AGGTCAGCAG CGACTTCCTA CTGATCGCCG GCACTCACCG CGACTTGCGC
GCACGGGTGG CCGAGGGGCT GTTCCGCGAA GACCTCTACG CGCGGATCAA TCTCTGGACC
TTCGATCTGC CCGGCCTGGC CGGGCGCCGC GAGGACATCG AGCCGAACAT CGATTTCGAG
CTGCAGCGCC ATGCACGGGA GCAGGGGCGA CTGGTGCGCT TCAATTTGGA GGCGCGGCGG
CGTTACCTGG CCTTCGCCAG CTCCAGCGAG GCCGCCTGGC AGGGCAACTT CCGCGAACTA
TCGGCCTCGA TCACGCGTAT GGCGACCCTG GCCGACAGCG GTCGCATCGA CGAGGCCCAG
GTGCAGGAGG AGATCGAGCG GCTGCGGCGA GCCTGGGGCC AGCAGAGCGA GCACGACGAA
GTGGTGCAGC TACTGGGCGA GGCGGCCGAT GCGCTGGATC TGTTCGACCG CCTGCAGCTG
CGGGCGGTGC TCGAGGTCTG CCGCCAGGCC GACAGCCTGT CCGATGCCGG GCGGCGGCTG
TACCAGGTGT CGCGCCTGTC CAAGGCACAG CCCAACGACG CCGATCGGTT GCGCAAGTAC
CTGGCGCGCT TCGGCCTCGA TTGGCAGGCC GTGCATCAGT AG
|
|---|
| Protein sequence | MRAKKTVAIG FIGATLDRVG KGANRWKKWR PSIGLCQQAD LLIDRLELIH GTDARDIGLA
ERIRADIEQI SPETEVRLQP MQLRNPWDFE EVYGALHDFT SAYAFDTEHE DYLVHITTGT
HVAQICWFLL TEARYLPARL VQTSPARKRD EAAQVTGTYT LIDLDLSRYD RIATRFKHQR
LEGLAFLKSG IATRNAAFNR SIEQIERVAV RSSAPMLLIG PTGAGKSFLA RRVYELKRSR
HLVDGRFVEV NCATLRGDGA MSALFGHIKG AFTGAQNARD GLLRAADGGM LFLDEIGELG
LDEQAMLLKA IEEKRFFPLG SDKEVSSDFL LIAGTHRDLR ARVAEGLFRE DLYARINLWT
FDLPGLAGRR EDIEPNIDFE LQRHAREQGR LVRFNLEARR RYLAFASSSE AAWQGNFREL
SASITRMATL ADSGRIDEAQ VQEEIERLRR AWGQQSEHDE VVQLLGEAAD ALDLFDRLQL
RAVLEVCRQA DSLSDAGRRL YQVSRLSKAQ PNDADRLRKY LARFGLDWQA VHQ
|
|---|
| |